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Tomato miRNA M00023
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| GGAGAAGCAGGGCACGUGCA | 20 | miR164 | S17811956 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 52 | 5.07 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 56 | 7.42 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 177 | 20.68 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 2 | 0.15 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 435 | 181.9 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 70 | 71.58 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 716 | 180.22 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 51 | 14.45 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 53 | 13.56 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 10 | 4.82 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 5 | 4.15 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 4 | 2.27 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 7 | 2.16 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 119 | 31.24 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 7 | 2.1 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 3 | 0.91 |
Hits on known miRNAs
| hit miRNA | alignment |
|---|---|
| aly-miR164a-5p | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| aly-miR164b-5p | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| ath-miR164a | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| ath-miR164b | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| bdi-miR164a | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| bdi-miR164b | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| bdi-miR164e | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| bna-miR164a | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| bra-miR164a | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| cme-miR164c | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| cme-miR164d | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| csi-miR164 | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| ctr-miR164 | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| ghr-miR164 | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| gma-miR164a | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| gma-miR164e | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| gma-miR164f | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| gma-miR164g | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| gma-miR164h | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| gma-miR164i | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| gma-miR164j | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| gma-miR164k | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| mdm-miR164b | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| mdm-miR164c | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| mdm-miR164d | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| mdm-miR164e | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| mdm-miR164f | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| mtr-miR164a | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| mtr-miR164b | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| mtr-miR164c | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| nta-miR164a | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| nta-miR164b | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| osa-miR164a | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| osa-miR164b | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| osa-miR164f | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| ptc-miR164a | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| ptc-miR164b | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| ptc-miR164c | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| ptc-miR164d | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| ptc-miR164e | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| rco-miR164a | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| rco-miR164b | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| rco-miR164c | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| sbi-miR164a | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| sbi-miR164d | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| sbi-miR164e | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| ssl-miR164a | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| ssl-miR164b | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| tae-miR164 | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| tcc-miR164a | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| tcc-miR164b | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| vvi-miR164a | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| vvi-miR164c | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| vvi-miR164d | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| zma-miR164a-5p | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| zma-miR164b-5p | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| zma-miR164c-5p | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| zma-miR164d-5p | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| zma-miR164g-5p | -GGAGAAGCAGGGCACGTGCA x|||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
Precursor of miRNA M00023
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch01 | 81732062 | 81732151 | + | GGAGAAGCAGGGCACGUGCA AAUUCUUGUAUUCGACAAUA UAUGCAUUACUAAUGGUAAU GCAUGAAUUUUGCACGUGUU CUCCUUCUCC |
-45.10 | NA | structure |
| SL2.40ch09 | 7197978 | 7198135 | + | GGAGAAGCAGGGCACGUGCA UUACUAACUCAUACGCAAGA UUUAUCGAUGUUUCGAAAAU UCUGCUAUCAUAGUACUGUA UUUUACAGCAAAUAGUGUUU GUACUUUACAUGUAUGUGAU AAAAUGAUGAGUUAGUUAUU CAUGUGCCUGUUUUCCCC |
-58.00 | NA | structure |
