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Tomato miRNA M00024
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UGGAGAAGCAGGGCACGUGC | 20 | miR164 | S23655829 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 1624 | 158.25 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 1164 | 154.28 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 235 | 27.45 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 27 | 5.81 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 1 | 0.07 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 5168 | 2161.07 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 826 | 844.63 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 12410 | 3123.66 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 717 | 203.21 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 599 | 153.25 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 274 | 131.99 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 65 | 54 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 59 | 33.45 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 333 | 102.75 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 1013 | 265.94 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 47 | 14.07 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 22 | 6.66 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 1 | 0.3 |
Hits on known miRNAs
| hit miRNA | alignment |
|---|---|
| aly-miR164a-5p | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| aly-miR164b-5p | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| aly-miR164c-5p | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCG |
| ath-miR164a | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| ath-miR164b | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| ath-miR164c | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCG |
| bdi-miR164a | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| bdi-miR164b | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| bdi-miR164c | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCT |
| bdi-miR164e | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| bna-miR164a | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| bna-miR164b | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCG |
| bna-miR164c | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCG |
| bna-miR164d | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCG |
| bra-miR164a | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| cme-miR164a | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCT |
| cme-miR164c | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| cme-miR164d | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| csi-miR164 | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| ctr-miR164 | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| ghr-miR164 | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| gma-miR164a | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| gma-miR164b | TGGAGAAGCAGGGCACGTGC |||||||||||||||||||| TGGAGAAGCAGGGCACGTGC |
| gma-miR164c | TGGAGAAGCAGGGCACGTGC |||||||||||||||||||| TGGAGAAGCAGGGCACGTGC |
| gma-miR164d | TGGAGAAGCAGGGCACGTGC |||||||||||||||||||| TGGAGAAGCAGGGCACGTGC |
| gma-miR164e | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| gma-miR164f | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| gma-miR164g | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| gma-miR164h | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| gma-miR164i | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| gma-miR164j | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| gma-miR164k | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| mdm-miR164b | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| mdm-miR164c | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| mdm-miR164d | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| mdm-miR164e | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| mdm-miR164f | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| mtr-miR164a | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| mtr-miR164b | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| mtr-miR164c | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| nta-miR164a | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| nta-miR164b | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| osa-miR164a | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| osa-miR164b | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| osa-miR164d | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCT |
| osa-miR164f | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| ptc-miR164a | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| ptc-miR164b | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| ptc-miR164c | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| ptc-miR164d | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| ptc-miR164e | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| rco-miR164a | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| rco-miR164b | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| rco-miR164c | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| sbi-miR164a | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| sbi-miR164b | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCT |
| sbi-miR164d | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| sbi-miR164e | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| ssl-miR164a | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| ssl-miR164b | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| tae-miR164 | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| tcc-miR164a | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| tcc-miR164b | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| vvi-miR164a | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| vvi-miR164c | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| vvi-miR164d | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| zma-miR164a-5p | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| zma-miR164b-5p | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| zma-miR164c-5p | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| zma-miR164d-5p | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
| zma-miR164f-5p | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCT |
| zma-miR164g-5p | TGGAGAAGCAGGGCACGTGC- ||||||||||||||||||||x TGGAGAAGCAGGGCACGTGCA |
Precursor of miRNA M00024
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch09 | 7197977 | 7198136 | + | UGGAGAAGCAGGGCACGUGC AUUACUAACUCAUACGCAAG AUUUAUCGAUGUUUCGAAAA UUCUGCUAUCAUAGUACUGU AUUUUACAGCAAAUAGUGUU UGUACUUUACAUGUAUGUGA UAAAAUGAUGAGUUAGUUAU UCAUGUGCCUGUUUUCCCCA |
-58.00 | NA | structure |
| SL2.40ch01 | 81732061 | 81732152 | + | UGGAGAAGCAGGGCACGUGC AAAUUCUUGUAUUCGACAAU AUAUGCAUUACUAAUGGUAA UGCAUGAAUUUUGCACGUGU UCUCCUUCUCCA |
-46.80 | NA | structure |
