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Tomato miRNA M00025
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UGGAGAAGCAGGGCACGUGCA | 21 | miR164 | S23655830 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 51483 | 5016.76 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 35067 | 4647.97 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 7298 | 852.57 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 71 | 15.29 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 697 | 51.41 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 444685 | 185951 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 44200 | 45196.7 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 604124 | 152061 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 47019 | 13326.3 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 33081 | 8463.44 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 8081 | 3892.6 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 2506 | 2081.83 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 2230 | 1264.42 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 17529 | 5408.47 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 51775 | 13592.3 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 10526 | 3150.58 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 5113 | 1547.41 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 125 | 37.67 |
Hits on known miRNAs
| hit miRNA | alignment |
|---|---|
| aly-miR164a-5p | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| aly-miR164b-5p | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| ath-miR164a | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| ath-miR164b | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| bdi-miR164a | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| bdi-miR164b | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| bdi-miR164e | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| bna-miR164a | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| bra-miR164a | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| cme-miR164c | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| cme-miR164d | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| csi-miR164 | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| ctr-miR164 | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| ghr-miR164 | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| gma-miR164a | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| gma-miR164e | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| gma-miR164f | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| gma-miR164g | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| gma-miR164h | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| gma-miR164i | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| gma-miR164j | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| gma-miR164k | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| mdm-miR164b | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| mdm-miR164c | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| mdm-miR164d | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| mdm-miR164e | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| mdm-miR164f | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| mtr-miR164a | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| mtr-miR164b | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| mtr-miR164c | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| nta-miR164a | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| nta-miR164b | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| osa-miR164a | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| osa-miR164b | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| osa-miR164f | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| ptc-miR164a | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| ptc-miR164b | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| ptc-miR164c | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| ptc-miR164d | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| ptc-miR164e | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| rco-miR164a | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| rco-miR164b | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| rco-miR164c | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| sbi-miR164a | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| sbi-miR164d | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| sbi-miR164e | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| ssl-miR164a | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| ssl-miR164b | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| tae-miR164 | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| tcc-miR164a | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| tcc-miR164b | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| vvi-miR164a | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| vvi-miR164c | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| vvi-miR164d | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| zma-miR164a-5p | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| zma-miR164b-5p | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| zma-miR164c-5p | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| zma-miR164d-5p | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
| zma-miR164g-5p | TGGAGAAGCAGGGCACGTGCA ||||||||||||||||||||| TGGAGAAGCAGGGCACGTGCA |
Precursor of miRNA M00025
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch01 | 81732061 | 81732152 | + | UGGAGAAGCAGGGCACGUGC AAAUUCUUGUAUUCGACAAU AUAUGCAUUACUAAUGGUAA UGCAUGAAUUUUGCACGUGU UCUCCUUCUCCA |
-46.80 | NA | structure |
