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Tomato miRNA M00032
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UCGGACCAGGCUUCAUUCCUC | 21 | miR166 | S22433659 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 1076 | 104.85 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 781 | 103.52 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 1099 | 128.39 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 3373 | 726.35 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 248892 | 18358.2 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 1078 | 450.78 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 167 | 170.77 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 3573 | 899.34 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 937 | 265.57 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 5151 | 1317.83 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 1721 | 829 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 549 | 456.08 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 1279 | 725.2 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 5625 | 1735.56 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 10779 | 2829.78 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 5399 | 1616 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 107719 | 32600.3 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 33682 | 10149.8 |
Hits on known miRNAs
| hit miRNA | alignment |
|---|---|
| aqc-miR166a | TCGGACCAGGCTTCATTCCTC ||||||||||||||||||||| TCGGACCAGGCTTCATTCCTC |
| aqc-miR166d | TCGGACCAGGCTTCATTCCTC ||||||||||||||||||||| TCGGACCAGGCTTCATTCCTC |
| cme-miR166e | TCGGACCAGGCTTCATTCCTC ||||||||||||||||||||| TCGGACCAGGCTTCATTCCTC |
| dpr-miR166a | TCGGACCAGGCTTCATTCCTC ||||||||||||||||||||| TCGGACCAGGCTTCATTCCTC |
| mtr-miR166c | TCGGACCAGGCTTCATTCCTC ||||||||||||||||||||| TCGGACCAGGCTTCATTCCTC |
| mtr-miR166f | TCGGACCAGGCTTCATTCCTC ||||||||||||||||||||| TCGGACCAGGCTTCATTCCTC |
| osa-miR166g-3p | TCGGACCAGGCTTCATTCCTC ||||||||||||||||||||| TCGGACCAGGCTTCATTCCTC |
| osa-miR166h-3p | TCGGACCAGGCTTCATTCCTC ||||||||||||||||||||| TCGGACCAGGCTTCATTCCTC |
| pab-miR166a | TCGGACCAGGCTTCATTCCTC ||||||||||||||||||||| TCGGACCAGGCTTCATTCCTC |
| sbi-miR166f | TCGGACCAGGCTTCATTCCTC ||||||||||||||||||||| TCGGACCAGGCTTCATTCCTC |
| ssl-miR166a | TCGGACCAGGCTTCATTCCTC ||||||||||||||||||||| TCGGACCAGGCTTCATTCCTC |
| tcc-miR166c | TCGGACCAGGCTTCATTCCTC ||||||||||||||||||||| TCGGACCAGGCTTCATTCCTC |
| zma-miR166l-3p | TCGGACCAGGCTTCATTCCTC ||||||||||||||||||||| TCGGACCAGGCTTCATTCCTC |
| zma-miR166m-3p | TCGGACCAGGCTTCATTCCTC ||||||||||||||||||||| TCGGACCAGGCTTCATTCCTC |
Precursor of miRNA M00032
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch01 | 84382054 | 84381908 | - | GGGGGAUGUUGUCUGGCUCG ACACAAUUACUCUAUUGUAU GUAUUUAGUUAUUCGUUAUC AAGAUUGAUGUCGAUAACGA AUAAAUUAAACACAUAUAUA CAAGAUGUAAAAAGGGAGUA AAGGCGUCGGACCAGGCUUC AUUCCUC |
-60.20 | NA | structure |
