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Tomato miRNA M00040
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UCGCUUGGUGCAGGUCGGGACC | 22 | miR168 | S22423036 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 1503 | 146.46 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 454 | 60.18 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 110 | 12.85 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 7288 | 1569.42 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 4953 | 365.33 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 1 | 0.42 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 3 | 3.07 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 4 | 1.01 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 11 | 3.12 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 2 | 0.51 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 7 | 3.37 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 7 | 5.82 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 4 | 2.27 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 4 | 1.23 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 5 | 1.31 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 30 | 8.98 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 34 | 10.29 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 88 | 26.52 |
Hits on known miRNAs
| hit miRNA | alignment |
|---|---|
| cme-miR168 | TCGCTTGGTGCAGGTCGGGACC ||||||||||||||||||||xx TCGCTTGGTGCAGGTCGGGA-- |
| nta-miR168a | TCGCTTGGTGCAGGTCGGGACC |||||||||||||||||||||x TCGCTTGGTGCAGGTCGGGAC- |
| nta-miR168b | TCGCTTGGTGCAGGTCGGGACC |||||||||||||||||||||x TCGCTTGGTGCAGGTCGGGAC- |
| nta-miR168c | TCGCTTGGTGCAGGTCGGGACC |||||||||||||||||||||x TCGCTTGGTGCAGGTCGGGAC- |
Precursor of miRNA M00040
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch12 | 63569025 | 63569158 | + | UCGCUUGGUGCAGGUCGGGA CCUACCUCGCCGGCAACAAU GGCGGUAGCUGACGGCGACG GCAGCGUACCGGUAAAAAAG AAUCUUAUUUUUACAUGUUG UUGCGUAGUUUGGGUCCCGC CUUGCAUCAACUGA |
-62.80 | NA | structure |
| SL2.40ch08 | 558760 | 558904 | + | UCGCUUGGUGCAGGUCGGGA CCUCAUUCGCCGGCGCCGGG AAUAAUGCCGGACGAACGAC GGCGGUGUUAAUUCUACUAA AGCUGUCACCGACGGAUAGA UGUUUGAUUAGCGGCGAAAU UUGGGUCCUGCCUUGCAUCA ACUGA |
-59.80 | NA | structure |
