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Tomato miRNA M00050
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| CUUGGACUGAAGGGAGCUCCC | 21 | miR319 | S14956632 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 2 | 0.23 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 25 | 5.38 |
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 167 | 128.69 |
| S0733 | Solanum lycopersicum | IL8-3 | seedlings, two-week-old | 15 | 11.38 |
| S0732 | Solanum lycopersicum | IL8-2-1 | seedlings, two-week-old | 5 | 3.56 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 15 | 11.05 |
| S0730 | Solanum lycopersicum | IL8-1-3 | seedlings, two-week-old | 17 | 10.61 |
| S0729 | Solanum lycopersicum | IL8-1D | seedlings, two-week-old | 53 | 33.76 |
| S0728 | Solanum lycopersicum | IL8-1-1 | seedlings, two-week-old | 73 | 48.11 |
| S0727 | Solanum lycopersicum | IL2-5 | seedlings, two-week-old | 47 | 28.73 |
| S0726 | Solanum lycopersicum | IL1-1 | seedlings, two-week-old | 97 | 58.07 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 4 | 3.9 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 10 | 5.84 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 1 | 0.71 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 82 | 89.27 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 35 | 33.44 |
| S0719 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate1 | 15 | 43.33 |
| S0718 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate2 | 21 | 14.63 |
| S0717 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate1 | 39 | 52.04 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 1 | 0.83 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 4 | 2.27 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 1 | 0.31 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 93 | 24.42 |
Hits on known miRNAs
| hit miRNA | alignment |
|---|---|
| ppt-miR319c | CTTGGACTGAAGGGAGCTCCC ||||||||||||||||||||| CTTGGACTGAAGGGAGCTCCC |
| ppt-miR319d-3p | CTTGGACTGAAGGGAGCTCCC ||||||||||||||||||||| CTTGGACTGAAGGGAGCTCCC |
| ppt-miR319e | CTTGGACTGAAGGGAGCTCCC ||||||||||||||||||||| CTTGGACTGAAGGGAGCTCCC |
Precursor of miRNA M00050
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch06 | 1551734 | 1551903 | + | GAGAGCUUCCUUUAGUCCAC UCAUAGGUAGACGAAGGAUU UGAAUUAUCUCCCGACUCAU UCAUUCAAACGCAAUAGGAA GUAUGUAAUCUUAUACUAUU GUGAAUGUGUGAAUGAUGCG GGAGAUAAAUUCUCUCCUUU UUAUCUGUGCUUGGACUGAA GGGAGCUCCC |
-87.00 | NA | structure |
| SL2.40ch05 | 2723948 | 2723776 | - | AGGAGCUCUCUCCGGUCCAG UCCGAGGCACUCAAAGGCUA AAAACACAGCUGACGACUCG UUGAUUCUCAAACAUAUCAA GAAGCAUUUUUUGAAAUUGG UGUGUUUAAGAUUCAACGAU GCGUGAGCUAUGUUUGGCUA GCGUUGUCACGUCUUGGACU GAAGGGAGCUCCC |
-83.10 | NA | structure |
