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Tomato miRNA M00051
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UUGGACUGAAGGGAGCUCCUU | 21 | miR319 | S25581462 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 24 | 2.34 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 19 | 2.52 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 1142 | 133.41 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 2394 | 515.53 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 2 | 0.15 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 3 | 1.25 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 13 | 3.27 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 6 | 1.7 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 12 | 3.07 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 151 | 72.74 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 42 | 34.89 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 72 | 40.82 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 16 | 4.94 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 188 | 49.36 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 1 | 0.3 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 2 | 0.61 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 3 | 0.9 |
Hits on known miRNAs
| hit miRNA | alignment |
|---|---|
| aly-miR319c-3p | TTGGACTGAAGGGAGCTCCTT ||||||||||||||||||||| TTGGACTGAAGGGAGCTCCTT |
| aly-miR319d-3p | TTGGACTGAAGGGAGCTCCTT ||||||||||||||||||||| TTGGACTGAAGGGAGCTCCTT |
| ath-miR319c | TTGGACTGAAGGGAGCTCCTT ||||||||||||||||||||| TTGGACTGAAGGGAGCTCCTT |
| gma-miR319g | TTGGACTGAAGGGAGCTCCTT- |||||||||||||||||||||x TTGGACTGAAGGGAGCTCCTTC |
| gma-miR319l | TTGGACTGAAGGGAGCTCCTT- |||||||||||||||||||||x TTGGACTGAAGGGAGCTCCTTC |
| pvu-miR319c | TTGGACTGAAGGGAGCTCCTT ||||||||||||||||||||| TTGGACTGAAGGGAGCTCCTT |
| rco-miR319d | TTGGACTGAAGGGAGCTCCTT ||||||||||||||||||||| TTGGACTGAAGGGAGCTCCTT |
Precursor of miRNA M00051
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch03 | 49898465 | 49898640 | + | AAGAGAGCUUCCUUCAGCCC ACUCACGGAGGAGAAAUGGG GUUGAAUUAGCUGCCGACUC AUUCAUCCAACCACUCAGUA GAAAGGAUAGGUUUUGUGCU ACUGUGAUUGAGUGAAUGAU GCGGGAGAUAGUUUUCUAUC CCUCUCUUUCCUUGCUUGGA CUGAAGGGAGCUCCUU |
-77.50 | NA | structure |
