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Tomato miRNA M00065

sequenceLengthmiRNA familysRNA IDtarget
UACGCAGGAGAGAUGAUGCUG21miR4376 S20850097NA

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739 Solanum lycopersicum Ailsa Craig fruit, red ripe (52 days after anthesis) 13 1.27
S0738 Solanum lycopersicum Ailsa Craig fruit, breaker (42 days after anthesis) 67 8.88
S0737 Solanum lycopersicum Ailsa Craig fruit, mature green (39 days after anthesis) 53 6.19
S0736 Solanum lycopersicum Ailsa Craig fruit, immature (17 days after anthesis) 1 0.22
S0735 Solanum lycopersicum Sunny leaf , TSWV-infected 1932 142.5
S0714 Solanum lycopersicum MicroTom fruit , 3 days post breaker 10 2.52
S0713 Solanum lycopersicum MicroTom fruit , breaker stage 1 0.28
S0712 Solanum lycopersicum MicroTom fruit , mature green 58 14.84
S0711 Solanum lycopersicum MicroTom fruit , 11mm to 14mm in diameter 5 2.41
S0710 Solanum lycopersicum MicroTom fruit , 5mm to 7mm in diameter 1 0.83
S0709 Solanum lycopersicum MicroTom fruit , 1mm to 3mm in diameter 19 10.77
S0708 Solanum lycopersicum MicroTom flower, open 370 114.16
S0707 Solanum lycopersicum MicroTom flower bud, closed bud before flower blooming 390 102.39
S0373 Solanum lycopersicum Heinz 1706 fruit 92 27.54
S0372 Solanum lycopersicum Heinz 1706 flower 306 92.61
S0371 Solanum lycopersicum Heinz 1706 leaf 1530 461.05

Hits on known miRNAs

hit miRNAalignment
gma-miR4376-5pTACGCAGGAGAGATGATGCTG-
||||||||||||||||x||||x
TACGCAGGAGAGATGACGCTGT

Precursor of miRNA M00065

genome hit of precursorprecursor
sequence IDstartendstrand sequencefolding
energy		miRNA*structure
SL2.40ch06 4541889 4541962 + UACGCAGGAGAGAUGAUGCU
GGACGAUAGAGAAAAUGGGA
UUUAAUUUAUUGGCCAGCAU
CAUACUCCUGCAUA		 -36.50 NA structure