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Tomato miRNA M00072

sequenceLengthmiRNA familysRNA IDtarget
UUUAGCAAGAGUUGUUUUACC21miR6024 S25985177click here

Digital expression

SampleNo. raw readsRPM
IDOrganismCultivarTissue
S0739 Solanum lycopersicum Ailsa Craig fruit, red ripe (52 days after anthesis) 13187 1285.01
S0738 Solanum lycopersicum Ailsa Craig fruit, breaker (42 days after anthesis) 18820 2494.5
S0737 Solanum lycopersicum Ailsa Craig fruit, mature green (39 days after anthesis) 889 103.85
S0736 Solanum lycopersicum Ailsa Craig fruit, immature (17 days after anthesis) 426 91.74
S0735 Solanum lycopersicum Sunny leaf , TSWV-infected 2714 200.18
S0716 Solanum lycopersicum MicroTom fruit , 7 days post breaker 2 0.84
S0715 Solanum lycopersicum MicroTom fruit , 5 days post breaker 4 4.09
S0714 Solanum lycopersicum MicroTom fruit , 3 days post breaker 6 1.51
S0713 Solanum lycopersicum MicroTom fruit , breaker stage 2 0.57
S0712 Solanum lycopersicum MicroTom fruit , mature green 13 3.33
S0711 Solanum lycopersicum MicroTom fruit , 11mm to 14mm in diameter 5 2.41
S0709 Solanum lycopersicum MicroTom fruit , 1mm to 3mm in diameter 8 4.54
S0708 Solanum lycopersicum MicroTom flower, open 76 23.45
S0707 Solanum lycopersicum MicroTom flower bud, closed bud before flower blooming 22 5.78
S0373 Solanum lycopersicum Heinz 1706 fruit 308 92.19
S0372 Solanum lycopersicum Heinz 1706 flower 315 95.33
S0371 Solanum lycopersicum Heinz 1706 leaf 754 227.21

Hits on known miRNAs

hit miRNAalignment
sly-miR6024-TTTAGCAAGAGTTGTTTTACC
x|||||||||||||||||||||
TTTTAGCAAGAGTTGTTTTACC

Precursor of miRNA M00072

genome hit of precursorprecursor
sequence IDstartendstrand sequencefolding
energy		miRNA*structure
SL2.40ch01 74999812 74999734 - GGAGAAACAACACUUGCUAA
AGGAAGUUCACCAGUCAUCU
CUUUUCUUUUGGAGUUUUUU
UAGCAAGAGUUGUUUUACC		 -29.10 NA structure