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Tomato miRNA M00074
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UUCUUGGCUAGAGUUGUAUUGC | 22 | miR6026 | S25243999 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 3527 | 343.69 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 1573 | 208.49 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 649 | 75.82 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 446 | 96.04 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 140 | 10.33 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 14 | 5.85 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 19 | 4.78 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 11 | 3.12 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 16 | 4.09 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 1 | 0.48 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 3 | 2.49 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 10 | 3.09 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 3 | 0.79 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 121 | 36.22 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 40 | 12.11 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 48 | 14.46 |
Hits on known miRNAs
| hit miRNA | alignment |
|---|---|
| sly-miR6026 | TTCTTGGCTAGAGTTGTATTGC |||||||||||||||||||||| TTCTTGGCTAGAGTTGTATTGC |
| stu-miR6026 | TTCTTGGCTAGAGTTGTATTGC |||||||||||||||||||||| TTCTTGGCTAGAGTTGTATTGC |
Precursor of miRNA M00074
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch01 | 832352 | 832561 | + | GUAAUACAACUAUAGCCAAG ACAAUGCUUCAUUAUAAGUG CAUAACUUUUCACUUUAUUG UUUGAGCAUUGUGUUGAUUU CUCUAAACUUGUUUUUCGUU GAACAAGAUUGUUUUUUCAU AUACUCAUGGAAAGCAACAC CGUGCUCAGAAGUUAGAGUG AAAUGUUAUGCAUUUGUGAU UAUAUAUUUUCUUGGCUAGA GUUGUAUUGC |
-93.30 | NA | structure |
