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Tomato miRNA M00079
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UGUCGCAGAUGACUUUCGC | 19 | NA | S24047117 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 4 | 0.39 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 5 | 0.66 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 2 | 0.23 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 7 | 0.52 |
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 72 | 55.48 |
| S0733 | Solanum lycopersicum | IL8-3 | seedlings, two-week-old | 61 | 46.27 |
| S0732 | Solanum lycopersicum | IL8-2-1 | seedlings, two-week-old | 51 | 36.33 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 60 | 44.19 |
| S0730 | Solanum lycopersicum | IL8-1-3 | seedlings, two-week-old | 63 | 39.34 |
| S0729 | Solanum lycopersicum | IL8-1D | seedlings, two-week-old | 83 | 52.87 |
| S0728 | Solanum lycopersicum | IL8-1-1 | seedlings, two-week-old | 55 | 36.25 |
| S0727 | Solanum lycopersicum | IL2-5 | seedlings, two-week-old | 46 | 28.12 |
| S0726 | Solanum lycopersicum | IL1-1 | seedlings, two-week-old | 62 | 37.11 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 252 | 245.88 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 373 | 217.75 |
| S0723 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate1 | 211 | 206.98 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 478 | 338.06 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 110 | 119.75 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 142 | 135.67 |
| S0719 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate1 | 32 | 92.44 |
| S0718 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate2 | 55 | 38.32 |
| S0717 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate1 | 7 | 9.34 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 1 | 0.42 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 18 | 4.53 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 2 | 0.57 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 22 | 5.63 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 54 | 26.01 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 8 | 6.65 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 8 | 4.54 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 11 | 3.39 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 31 | 8.14 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 2 | 0.6 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 3 | 0.91 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 9 | 2.71 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00079
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch08 | 53776411 | 53776495 | + | UGUCGCAGAUGACUUUCGCC CAUUUAUAGAACCACACUUU CUUUAAUUUGAAUUCUAUGU GGUAGGACGAGAGUCAUCUG UGACA |
-37.30 | NA | structure |
| SL2.40ch08 | 53789929 | 53790013 | + | UGUCGCAGAUGACUUUCGCC CAUUUAUGGAACCACACUUU CUUUAAUUUGAAUUCUAUGU GGUAGGACGAGAGUCAUCUG UGACA |
-38.30 | NA | structure |
| SL2.40ch12 | 6988968 | 6988874 | - | UGUCGCAGAUGACUUUCGCC CUUCUAAGGAACCACACUUU CUGUAAAUCUAAUUAAUUUG AAUUCAAUGUGGCAGGACGA GAGUCAUCUGUGACA |
-37.34 | NA | structure |
