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Tomato miRNA M00082
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| CGGAGAGUAGAAGGCAAGAG | 20 | NA | S14051923 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 4 | 0.3 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 224 | 93.67 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 112 | 114.53 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 644 | 162.1 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 162 | 45.91 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 202 | 51.68 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 178 | 85.74 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 95 | 78.92 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 312 | 176.9 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 62 | 19.13 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 113 | 29.67 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00082
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch05 | 7331982 | 7332138 | + | CGGAGAGUAGAAGGCAAGAG GAUCUAUUUCACUCAGAGCA UUUAGCAUCUGUUUGGAGGA AGAUGAAGGAGAAGACAUGU UCUUUUUUUAAAAAAAAUGG UUUCUUUGAACAGUUAAGAG AAAAAGAAGAAUUUUUUUUU GCCUUUUUAGCUUUUUG |
-41.86 | NA | structure |
