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Tomato miRNA M00087
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| CUUGGAACCACAGUUACCACC | 21 | NA | S14954211 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 3 | 0.35 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 1 | 0.07 |
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 1 | 0.77 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 111 | 108.3 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 28 | 16.35 |
| S0723 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate1 | 7 | 6.87 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 124 | 87.7 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 29 | 31.57 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 7 | 6.69 |
| S0719 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate1 | 31 | 89.55 |
| S0717 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate1 | 1 | 1.33 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00087
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch12 | 4194542 | 4194345 | - | GUUGGUGAUUGUGGUUCGAA AAUUGAUGUUGAUUAUCCCU UUAUAUUAGUCUGGUAUUUU CUCUGUUUCAAUUUAUUUAU UCUAUUUAUUUUUAUAAUCU GUUUCAAAUUUUUAUAUAUU UAAAUUCUGAACUCGCAUAC ACGUGAUGUACAAAAUGUAU AGACACAACAUUACAAUCUU GGAACCACAGUUACCACC |
-42.83 | NA | structure |
