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Tomato miRNA M00112
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UGAGAUGGUAAUAACGGUGAU | 21 | NA | S23224349 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 17 | 1.66 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 88 | 11.66 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 161 | 18.81 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 7993 | 589.56 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 900 | 376.35 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 89 | 91.01 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 1276 | 321.18 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 301 | 85.31 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 676 | 172.95 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 4 | 1.93 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 12 | 6.8 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 333 | 102.75 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 82 | 21.53 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 4145 | 1240.66 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 1053 | 318.68 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 12447 | 3750.8 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00112
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch11 | 36953067 | 36952878 | - | UGAGAUGGUAAUAACGGUGA UAAUGGUAUUCUAAUAUUGC UAAAGUUAGACAGAUUUACU GCCUUUUGUUAUUUCAGAUG CAGGAACACCAAUACAAGAA GCAAUGAGCUUGCUUGGGCA UGUCAAAAGCCGUAAAUCCA UUCAAUUUUAGCAAUAUUGG AAUACCAUCAUCACCGUUAU UACCACCUGG |
-85.61 | miRNA* | structure |
