 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Tomato miRNA M00116
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| AGUUGACGGCGUUAGAUUGAUA | 22 | NA | S08637549 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 24 | 18.49 |
| S0733 | Solanum lycopersicum | IL8-3 | seedlings, two-week-old | 19 | 14.41 |
| S0732 | Solanum lycopersicum | IL8-2-1 | seedlings, two-week-old | 11 | 7.84 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 12 | 8.84 |
| S0730 | Solanum lycopersicum | IL8-1-3 | seedlings, two-week-old | 23 | 14.36 |
| S0729 | Solanum lycopersicum | IL8-1D | seedlings, two-week-old | 5 | 3.19 |
| S0728 | Solanum lycopersicum | IL8-1-1 | seedlings, two-week-old | 11 | 7.25 |
| S0727 | Solanum lycopersicum | IL2-5 | seedlings, two-week-old | 20 | 12.23 |
| S0726 | Solanum lycopersicum | IL1-1 | seedlings, two-week-old | 23 | 13.77 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 11 | 10.73 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 19 | 11.09 |
| S0723 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate1 | 6 | 5.89 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 20 | 14.14 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 17 | 18.51 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 42 | 40.13 |
| S0719 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate1 | 35 | 101.11 |
| S0718 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate2 | 14 | 9.75 |
| S0717 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate1 | 15 | 20.02 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 40 | 16.73 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 7 | 7.16 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 40 | 10.07 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 45 | 12.75 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 58 | 14.84 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 16 | 7.71 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 5 | 4.15 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 22 | 12.47 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 42 | 12.96 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 86 | 22.58 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00116
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch08 | 1499357 | 1499485 | + | AGUUGACGGCGUUAGAUUGA UAUAUGUUACUCAUAGUAAC AUUUUACUCCUAACACGUUA CUCAAAAUAACGUUUUAGGA AUAAAAUAUUACUCACAGUA ACGUAUAUCAACCUAACGCU GUUAGUUUU |
-58.10 | NA | structure |
| SL2.40ch10 | 43631704 | 43631861 | + | AGUUGACGGCGUUAGAUUGA UAUAAGUUACUCACAAUAAU GUUUUACUCCUAAAACGUUA GUCACAGUAACGUUUUAAGA GUAAAAUAUUACUCAAAAUA ACGUUUUAGGAGUAAAAUGU UACUUACAGUAACGUAUAUU AACCUAACGCUGUUAAUU |
-69.40 | NA | structure |
| SL2.40ch02 | 42047750 | 42047845 | + | AGUUGACGGCGUUAGAUUGA UAUACGUUACUCAAAAUGAC UUUUUAGAAGUAAAGCGUUA CUUACAGUUACGUAUAUCAA CCUAACGCUAUUAAUU |
-34.10 | NA | structure |
| SL2.40ch04 | 53972450 | 53972291 | - | AGUUGACGGCGUUAGAUUGA UACACGUUACUUAGACUAAC GUUUUACUCCUAAAAUGUUA UUCACAGUAAUGUUUUAGGA GUGAAACGUUACUCAAAAUG ACAUUAUAGGAGUAAAACGU UACUUACAGUUACGUAUAUC AAUCUAACGCUCUUAGUUCU |
-73.10 | NA | structure |
| SL2.40ch02 | 29507559 | 29507433 | - | AGUUGACGGCGUUAGAUUGA UAUACGUUACUCACAGUAAC GUUUUACUCGUGAAACGUUA UUGUGAGUAACGUCUUACUC UUAAAACGUUACUCAGAGUA ACGUAUAUCAACCUAACGCU GUUAGUU |
-69.30 | NA | structure |
