Tomato miRNA M00120
Digital expression
| Sample | No. raw reads | RPM |
|---|
| ID | Organism | Cultivar | Tissue |
|---|
| S0735 |
Solanum lycopersicum |
Sunny |
leaf , TSWV-infected |
1820 |
134.24 |
| S0711 |
Solanum lycopersicum |
MicroTom |
fruit , 11mm to 14mm in diameter |
1 |
0.48 |
| S0709 |
Solanum lycopersicum |
MicroTom |
fruit , 1mm to 3mm in diameter |
2 |
1.13 |
| S0708 |
Solanum lycopersicum |
MicroTom |
flower, open |
2 |
0.62 |
| S0373 |
Solanum lycopersicum |
Heinz 1706 |
fruit |
24 |
7.18 |
| S0372 |
Solanum lycopersicum |
Heinz 1706 |
flower |
88 |
26.63 |
| S0371 |
Solanum lycopersicum |
Heinz 1706 |
leaf |
17 |
5.12 |
Hits on known miRNAs
| No hits on known miRNAs were found | Precursor of miRNA M00120
| genome hit of precursor | precursor |
|---|
| sequence ID | start | end | strand |
sequence | folding
energy | miRNA* | structure |
|---|
| SL2.40ch08 |
59305786 |
59305676 |
- |
UUAACCCCGAUAAAAUCUAA
GUUUCCAAAGGCUUUAAUGU
UACUCGUCAAGUAAAUGGUG
AUGAGUUGGUAAUGUUAAGG
UUUUUGGAAUCUUGGAUUUU
AUCGGAGUUAA |
-53.00 |
NA |
structure |
|
