Tomato Functional Genomics Database (TFGD)

sequence	Length	miRNA family	sRNA ID	target
AUGGGUAGCACAAGGAUUAAUG	22	NA	S11225252	click here

Sample				No. raw reads	RPM
ID	Organism	Cultivar	Tissue	No. raw reads	RPM
S0739	Solanum lycopersicum	Ailsa Craig	fruit, red ripe (52 days after anthesis)	581	56.62
S0738	Solanum lycopersicum	Ailsa Craig	fruit, breaker (42 days after anthesis)	740	98.08
S0737	Solanum lycopersicum	Ailsa Craig	fruit, mature green (39 days after anthesis)	755	88.2
S0736	Solanum lycopersicum	Ailsa Craig	fruit, immature (17 days after anthesis)	1176	253.24
S0735	Solanum lycopersicum	Sunny	leaf , TSWV-infected	1051	77.52
S0716	Solanum lycopersicum	MicroTom	fruit , 7 days post breaker	4	1.67
S0714	Solanum lycopersicum	MicroTom	fruit , 3 days post breaker	8	2.01
S0713	Solanum lycopersicum	MicroTom	fruit , breaker stage	1	0.28
S0712	Solanum lycopersicum	MicroTom	fruit , mature green	6	1.54
S0711	Solanum lycopersicum	MicroTom	fruit , 11mm to 14mm in diameter	9	4.34
S0710	Solanum lycopersicum	MicroTom	fruit , 5mm to 7mm in diameter	1	0.83
S0709	Solanum lycopersicum	MicroTom	fruit , 1mm to 3mm in diameter	10	5.67
S0708	Solanum lycopersicum	MicroTom	flower, open	10	3.09
S0707	Solanum lycopersicum	MicroTom	flower bud, closed bud before flower blooming	3	0.79
S0373	Solanum lycopersicum	Heinz 1706	fruit	152	45.5
S0372	Solanum lycopersicum	Heinz 1706	flower	248	75.06
S0371	Solanum lycopersicum	Heinz 1706	leaf	218	65.69

No hits on known miRNAs were found

genome hit of precursor				precursor
sequence ID	start	end	strand	sequence	folding energy	miRNA*	structure
SL2.40ch10	62182533	62182653	+	AUGGGUAGCACAAGGAUUAA UGUGAAACAGAAAAGUGAUA UGCAAAGAAGAUGGAGAUUC AAUUGUUUAUUGUUACGAAG AAAACACUUUUGUGUUUCUC GUGAAUCCUUCGGCUAUCCA U	-42.20	miRNA*	structure