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Tomato miRNA M00127
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UAACUUCGUCUAGCUCGCCUUC | 22 | NA | S20441305 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 99 | 9.65 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 45 | 5.96 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 94 | 10.98 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 1296 | 279.08 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 443 | 32.68 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 3 | 1.25 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 2 | 2.05 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 14 | 3.52 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 3 | 0.85 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 10 | 2.56 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 2 | 0.96 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 3 | 2.49 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 12 | 6.8 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 4 | 1.23 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 6 | 1.58 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 500 | 149.66 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 189 | 57.2 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 88 | 26.52 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00127
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch10 | 1709809 | 1709940 | + | UAACUUCGUCUAGCUCGCCU UCUAACUUACUCUGGACUUU UACUCAUUAAAAAUUAUCGU AACCACCUCUGCACCACUAC AUUAAUAACUGAAAUGUCAG UAGUUAGUUAGAAGGGGAGA UAGAUGAAGUUA |
-43.93 | miRNA* | structure |
