Tomato miRNA M00138
| sequence | Length | miRNA family | sRNA ID | target |
|---|
| UUGGCUGAGUGAGCAUCACGGAA | 23 | NA |
S25628350 | NA |
Digital expression
| Sample | No. raw reads | RPM |
|---|
| ID | Organism | Cultivar | Tissue |
|---|
| S0735 |
Solanum lycopersicum |
Sunny |
leaf , TSWV-infected |
20 |
1.48 |
| S0714 |
Solanum lycopersicum |
MicroTom |
fruit , 3 days post breaker |
1 |
0.25 |
| S0713 |
Solanum lycopersicum |
MicroTom |
fruit , breaker stage |
4 |
1.13 |
| S0712 |
Solanum lycopersicum |
MicroTom |
fruit , mature green |
2 |
0.51 |
| S0711 |
Solanum lycopersicum |
MicroTom |
fruit , 11mm to 14mm in diameter |
2 |
0.96 |
| S0710 |
Solanum lycopersicum |
MicroTom |
fruit , 5mm to 7mm in diameter |
1 |
0.83 |
| S0708 |
Solanum lycopersicum |
MicroTom |
flower, open |
8 |
2.47 |
| S0707 |
Solanum lycopersicum |
MicroTom |
flower bud, closed bud before flower blooming |
2 |
0.53 |
| S0373 |
Solanum lycopersicum |
Heinz 1706 |
fruit |
390 |
116.73 |
| S0372 |
Solanum lycopersicum |
Heinz 1706 |
flower |
130 |
39.34 |
| S0371 |
Solanum lycopersicum |
Heinz 1706 |
leaf |
423 |
127.47 |
Hits on known miRNAs
| No hits on known miRNAs were found | Precursor of miRNA M00138
| genome hit of precursor | precursor |
|---|
| sequence ID | start | end | strand |
sequence | folding
energy | miRNA* | structure |
|---|
| SL2.40ch12 |
1977868 |
1977755 |
- |
UUCUCAGGUGCUCACUCAGC
UAAUAGUUAUUAUUUAAGAA
ACUCAAUAAUAUUGGCAGCA
AGGAGAAUGGUGACUUUCAG
GAUGAUAACUAUUGGCUGAG
UGAGCAUCACGGAA |
-51.10 |
NA |
structure |
|
