 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Tomato miRNA M00139
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| GGGAUUGUAGGCAGAGAGAUGGC | 23 | NA | S18235633 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 2 | 0.15 |
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 143 | 110.2 |
| S0733 | Solanum lycopersicum | IL8-3 | seedlings, two-week-old | 26 | 19.72 |
| S0732 | Solanum lycopersicum | IL8-2-1 | seedlings, two-week-old | 94 | 66.97 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 111 | 81.75 |
| S0730 | Solanum lycopersicum | IL8-1-3 | seedlings, two-week-old | 141 | 88.04 |
| S0729 | Solanum lycopersicum | IL8-1D | seedlings, two-week-old | 52 | 33.13 |
| S0728 | Solanum lycopersicum | IL8-1-1 | seedlings, two-week-old | 73 | 48.11 |
| S0727 | Solanum lycopersicum | IL2-5 | seedlings, two-week-old | 109 | 66.64 |
| S0726 | Solanum lycopersicum | IL1-1 | seedlings, two-week-old | 137 | 82.01 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 11 | 10.73 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 9 | 5.25 |
| S0723 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate1 | 6 | 5.89 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 28 | 19.8 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 45 | 48.99 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 9 | 8.6 |
| S0719 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate1 | 11 | 31.78 |
| S0718 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate2 | 65 | 45.28 |
| S0717 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate1 | 98 | 130.77 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 15 | 6.27 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 14 | 14.32 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 33 | 8.31 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 32 | 9.07 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 24 | 6.14 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 68 | 32.76 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 65 | 54 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 174 | 98.66 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 27 | 8.33 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 49 | 12.86 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 1 | 0.3 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00139
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch02 | 45487028 | 45487199 | + | GCCAUCUUCCUGGCUAUAUU CCCUUGUAAAGUGUCCCUCU UCGCCGCAUUUGUAGCAUCC CGCUAUUCCUCCACCGCCUC CCUGGCUACAUUCCCUUGCG AAAGAAGGAGGGGGCUGCUA CAAAUGUGGGGAAGAAGGGC AUUUUGGAAGGGAUUGUAGG CAGAGAGAUGGC |
-101.70 | NA | structure |
| SL2.40ch02 | 45483331 | 45483502 | + | GCCAUCUUCCUGGCUAUAUU CCCUUGUAAAGUGUCCUUCU UGUCCGCAUUUGUAGCAUCC CGCUCCUCCUCCACCGCCUC CUUGGCUACAUUCCCUUGUG AAAGAAGGAAGGGGCUGCUA CAAAUGUGGGGAAGAAGGGC AUUUUGGAAGGGAUUGUAGG CAGAGAGAUGGC |
-102.20 | NA | structure |
