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Tomato miRNA M00144
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| AAGCUGACGGCGUUAGAUUGAUA | 23 | NA | S02673911 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 3 | 0.29 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 2 | 0.27 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 4 | 0.47 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 1 | 0.07 |
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 77 | 59.34 |
| S0733 | Solanum lycopersicum | IL8-3 | seedlings, two-week-old | 39 | 29.59 |
| S0732 | Solanum lycopersicum | IL8-2-1 | seedlings, two-week-old | 28 | 19.95 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 63 | 46.4 |
| S0730 | Solanum lycopersicum | IL8-1-3 | seedlings, two-week-old | 96 | 59.94 |
| S0729 | Solanum lycopersicum | IL8-1D | seedlings, two-week-old | 61 | 38.86 |
| S0728 | Solanum lycopersicum | IL8-1-1 | seedlings, two-week-old | 66 | 43.5 |
| S0727 | Solanum lycopersicum | IL2-5 | seedlings, two-week-old | 68 | 41.57 |
| S0726 | Solanum lycopersicum | IL1-1 | seedlings, two-week-old | 72 | 43.1 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 140 | 136.6 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 212 | 123.76 |
| S0723 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate1 | 173 | 169.7 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 146 | 103.26 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 48 | 52.25 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 68 | 64.97 |
| S0719 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate1 | 48 | 138.66 |
| S0718 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate2 | 20 | 13.93 |
| S0717 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate1 | 77 | 102.75 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 48 | 20.07 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 8 | 8.18 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 35 | 8.81 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 32 | 9.07 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 103 | 26.35 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 22 | 10.6 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 13 | 10.8 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 11 | 6.24 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 38 | 11.72 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 64 | 16.8 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 1 | 0.3 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 1 | 0.3 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00144
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch03 | 58286817 | 58286943 | + | AAGCUGACGGCGUUAGAUUG AUAUUUGUACUCACAAAAAC GUUUUAGGAUUAAAAUGUUA CUCAAAAUAACGUUUAAGGA GUAAAACGUUACUUACAGUA ACAUAUAUCAACCUAAUGUU GUUACUU |
-36.70 | NA | structure |
| SL2.40ch04 | 56604395 | 56604574 | + | AAGCUGACGGCGUUAGAUUG AUAUACAUUACUCACAAUAA CGAUUUACUCCUAACACGUU ACUCACAGUAAUGUUUUAGG AGUAAAACGUUACUCAAACU AAAGUUUUAGUACUCGAAAU AACGUUUUAAGAGUACAACU UUUCUCACGGUAACAUAUAU CAACCUAACACUGUUAGUUU |
-64.86 | NA | structure |
| SL2.40ch04 | 4377587 | 4377428 | - | AAGCUGACGGCGUUAGAUUG AUAUACAUUACUCAUAGUAA CGUUUUACUCCUAAAACGUU AAUGUGAGUAACGUCUUACU CUUAAAACGUUACUUACAAU AACGUUUUAGGAGUAAAAUG UUACUCACAGUAACGUAUAU CAACCUAACACUGUUAAUUU |
-82.50 | NA | structure |
| SL2.40ch02 | 38576910 | 38576781 | - | AAGCUGACGGCGUUAGAUUG AUAUACGCUAUUCACAGUAA CGUUUUAGGAGUAAAACGUU AUUCAAAAAUAACGUUUUAG GAGUAAAGCGUUACUUACGG UAACAUAUACUAACCUAACG UUGUUAGUUU |
-47.00 | NA | structure |
