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Tomato miRNA M00147
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| GCUGACGGCGUUAGAUUGAUAUA | 23 | NA | S17569896 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 1 | 0.1 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 1 | 0.22 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 11 | 0.81 |
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 97 | 74.75 |
| S0733 | Solanum lycopersicum | IL8-3 | seedlings, two-week-old | 46 | 34.9 |
| S0732 | Solanum lycopersicum | IL8-2-1 | seedlings, two-week-old | 40 | 28.5 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 54 | 39.77 |
| S0730 | Solanum lycopersicum | IL8-1-3 | seedlings, two-week-old | 85 | 53.07 |
| S0729 | Solanum lycopersicum | IL8-1D | seedlings, two-week-old | 44 | 28.03 |
| S0728 | Solanum lycopersicum | IL8-1-1 | seedlings, two-week-old | 44 | 29 |
| S0727 | Solanum lycopersicum | IL2-5 | seedlings, two-week-old | 51 | 31.18 |
| S0726 | Solanum lycopersicum | IL1-1 | seedlings, two-week-old | 48 | 28.73 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 305 | 297.59 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 325 | 189.73 |
| S0723 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate1 | 394 | 386.49 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 340 | 240.46 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 153 | 166.56 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 352 | 336.32 |
| S0719 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate1 | 124 | 358.2 |
| S0718 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate2 | 111 | 77.33 |
| S0717 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate1 | 91 | 121.43 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 32 | 13.38 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 11 | 11.25 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 19 | 4.78 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 64 | 18.14 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 33 | 8.44 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 11 | 5.3 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 3 | 2.49 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 12 | 6.8 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 10 | 3.09 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 30 | 7.88 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 1 | 0.3 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00147
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch04 | 56604397 | 56604572 | + | GCUGACGGCGUUAGAUUGAU AUACAUUACUCACAAUAACG AUUUACUCCUAACACGUUAC UCACAGUAAUGUUUUAGGAG UAAAACGUUACUCAAACUAA AGUUUUAGUACUCGAAAUAA CGUUUUAAGAGUACAACUUU UCUCACGGUAACAUAUAUCA ACCUAACACUGUUAGU |
-63.36 | NA | structure |
| SL2.40ch04 | 4377585 | 4377430 | - | GCUGACGGCGUUAGAUUGAU AUACAUUACUCAUAGUAACG UUUUACUCCUAAAACGUUAA UGUGAGUAACGUCUUACUCU UAAAACGUUACUUACAAUAA CGUUUUAGGAGUAAAAUGUU ACUCACAGUAACGUAUAUCA ACCUAACACUGUUAAU |
-82.50 | NA | structure |
| SL2.40ch02 | 38576908 | 38576783 | - | GCUGACGGCGUUAGAUUGAU AUACGCUAUUCACAGUAACG UUUUAGGAGUAAAACGUUAU UCAAAAAUAACGUUUUAGGA GUAAAGCGUUACUUACGGUA ACAUAUACUAACCUAACGUU GUUAGU |
-45.50 | NA | structure |
