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Tomato miRNA M00149
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| AUGGCAGAGACAAUACCUGAAUA | 23 | NA | S11184179 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 1 | 0.13 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 2 | 0.23 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 1 | 0.22 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 11 | 0.81 |
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 18 | 13.87 |
| S0733 | Solanum lycopersicum | IL8-3 | seedlings, two-week-old | 39 | 29.59 |
| S0732 | Solanum lycopersicum | IL8-2-1 | seedlings, two-week-old | 6 | 4.27 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 23 | 16.94 |
| S0730 | Solanum lycopersicum | IL8-1-3 | seedlings, two-week-old | 25 | 15.61 |
| S0729 | Solanum lycopersicum | IL8-1D | seedlings, two-week-old | 27 | 17.2 |
| S0728 | Solanum lycopersicum | IL8-1-1 | seedlings, two-week-old | 23 | 15.16 |
| S0727 | Solanum lycopersicum | IL2-5 | seedlings, two-week-old | 36 | 22.01 |
| S0726 | Solanum lycopersicum | IL1-1 | seedlings, two-week-old | 20 | 11.97 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 487 | 475.17 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 479 | 279.63 |
| S0723 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate1 | 667 | 654.28 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 223 | 157.71 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 170 | 185.06 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 246 | 235.04 |
| S0719 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate1 | 116 | 335.09 |
| S0718 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate2 | 4 | 2.79 |
| S0717 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate1 | 14 | 18.68 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 15 | 6.27 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 31 | 7.8 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 9 | 2.55 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 31 | 7.93 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 10 | 4.82 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 6 | 4.98 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 22 | 6.79 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 32 | 8.4 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 3 | 0.9 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 2 | 0.61 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 1 | 0.3 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00149
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch10 | 64094133 | 64094355 | + | AUUCAGGUAUAGUCUCUGCC AUGGGCGGCCAUUCGCUCUU UUAAUCCCCUCUUAUUGGCA UGCAGCCUCAAGGGAGAAUC GAACCCGUGACCUAUGGCUC CUUUACAUCCCUCCCAAGGA GAUCGCCUUUCACCAAUUAA GCUGCAGCUCCUUGAGGCUG CAUGCCAAUAAGAGGGGAUU AAAAGAGCGAAUGGCCGCCC AUGGCAGAGACAAUACCUGA AUA |
-160.60 | NA | structure |
| SL2.40ch02 | 49238937 | 49238753 | - | UACUCAGGUAUUGUCUCUGC CAUGGGCGGCCAUUCGCUCU UUUAAUCCCCUCUUAUUGGC UCGCAGCCUCAAGGGAGAAU CGAACCCGUGACCUAUGGCU CCUUUACAUUCCCUUGAGGC AGCAAGCCAAUAAGAGGGGA UUAAAAGAGCGAAUGGCCGC CAAUGGCAGAGACAAUACCU GAAUA |
-141.17 | NA | structure |
