Tomato Functional Genomics Database (TFGD)

Tomato miRNA M00150

sequence	Length	miRNA family	sRNA ID	target
AAGUUGACGGCGUUAGAUUGAUA	23	NA	S03156022	click here

Digital expression

Sample				No. raw reads	RPM
ID	Organism	Cultivar	Tissue	No. raw reads	RPM
S0739	Solanum lycopersicum	Ailsa Craig	fruit, red ripe (52 days after anthesis)	1	0.1
S0738	Solanum lycopersicum	Ailsa Craig	fruit, breaker (42 days after anthesis)	2	0.27
S0737	Solanum lycopersicum	Ailsa Craig	fruit, mature green (39 days after anthesis)	1	0.12
S0735	Solanum lycopersicum	Sunny	leaf , TSWV-infected	10	0.74
S0734	Solanum lycopersicum	IL8-3-1	seedlings, two-week-old	180	138.71
S0733	Solanum lycopersicum	IL8-3	seedlings, two-week-old	112	84.96
S0732	Solanum lycopersicum	IL8-2-1	seedlings, two-week-old	64	45.6
S0731	Solanum lycopersicum	IL8-2	seedlings, two-week-old	116	85.43
S0730	Solanum lycopersicum	IL8-1-3	seedlings, two-week-old	186	116.14
S0729	Solanum lycopersicum	IL8-1D	seedlings, two-week-old	105	66.89
S0728	Solanum lycopersicum	IL8-1-1	seedlings, two-week-old	131	86.34
S0727	Solanum lycopersicum	IL2-5	seedlings, two-week-old	124	75.81
S0726	Solanum lycopersicum	IL1-1	seedlings, two-week-old	144	86.2
S0725	Solanum lycopersicum x S. pennellii	M82 x LA716 (F2)	seedlings, two-week-old , replicate3	181	176.6
S0724	Solanum lycopersicum x S. pennellii	M82 x LA716 (F2)	seedlings, two-week-old , replicate2	265	154.7
S0723	Solanum lycopersicum x S. pennellii	M82 x LA716 (F2)	seedlings, two-week-old , replicate1	155	152.05
S0722	Solanum lycopersicum x S. pennellii	M82 x LA716 (F1)	seedlings, two-week-old , replicate2	192	135.79
S0721	Solanum lycopersicum x S. pennellii	M82 x LA716 (F1)	seedlings, two-week-old , replicate1	151	164.38
S0720	Solanum pennellii	LA716	seedlings, two-week-old , replicate2	224	214.02
S0719	Solanum pennellii	LA716	seedlings, two-week-old , replicate1	256	739.51
S0718	Solanum lycopersicum	M82	seedlings, two-week-old , replicate2	70	48.76
S0717	Solanum lycopersicum	M82	seedlings, two-week-old , replicate1	200	266.89
S0716	Solanum lycopersicum	MicroTom	fruit , 7 days post breaker	185	77.36
S0715	Solanum lycopersicum	MicroTom	fruit , 5 days post breaker	32	32.72
S0714	Solanum lycopersicum	MicroTom	fruit , 3 days post breaker	180	45.31
S0713	Solanum lycopersicum	MicroTom	fruit , breaker stage	198	56.12
S0712	Solanum lycopersicum	MicroTom	fruit , mature green	131	33.52
S0711	Solanum lycopersicum	MicroTom	fruit , 11mm to 14mm in diameter	37	17.82
S0710	Solanum lycopersicum	MicroTom	fruit , 5mm to 7mm in diameter	18	14.95
S0709	Solanum lycopersicum	MicroTom	fruit , 1mm to 3mm in diameter	23	13.04
S0708	Solanum lycopersicum	MicroTom	flower, open	66	20.36
S0707	Solanum lycopersicum	MicroTom	flower bud, closed bud before flower blooming	124	32.55
S0373	Solanum lycopersicum	Heinz 1706	fruit	2	0.6
S0371	Solanum lycopersicum	Heinz 1706	leaf	1	0.3

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00150

genome hit of precursor				precursor
sequence ID	start	end	strand	sequence	folding energy	miRNA*	structure
SL2.40ch02	42047749	42047846	+	AAGUUGACGGCGUUAGAUUG AUAUACGUUACUCAAAAUGA CUUUUUAGAAGUAAAGCGUU ACUUACAGUUACGUAUAUCA ACCUAACGCUAUUAAUUU	-35.00	NA	structure
SL2.40ch08	1499356	1499486	+	AAGUUGACGGCGUUAGAUUG AUAUAUGUUACUCAUAGUAA CAUUUUACUCCUAACACGUU ACUCAAAAUAACGUUUUAGG AAUAAAAUAUUACUCACAGU AACGUAUAUCAACCUAACGC UGUUAGUUUUU	-58.10	NA	structure
SL2.40ch10	43631703	43631862	+	AAGUUGACGGCGUUAGAUUG AUAUAAGUUACUCACAAUAA UGUUUUACUCCUAAAACGUU AGUCACAGUAACGUUUUAAG AGUAAAAUAUUACUCAAAAU AACGUUUUAGGAGUAAAAUG UUACUUACAGUAACGUAUAU UAACCUAACGCUGUUAAUUU	-70.30	NA	structure
SL2.40ch02	29507560	29507432	-	AAGUUGACGGCGUUAGAUUG AUAUACGUUACUCACAGUAA CGUUUUACUCGUGAAACGUU AUUGUGAGUAACGUCUUACU CUUAAAACGUUACUCAGAGU AACGUAUAUCAACCUAACGC UGUUAGUUU	-69.30	NA	structure