Tomato Functional Genomics Database (TFGD)

Tomato miRNA M00152

sequence	Length	miRNA family	sRNA ID	target
AGGGAUUGUAGGCAGAGAGAUGG	23	NA	S07846780	click here

Digital expression

Sample				No. raw reads	RPM
ID	Organism	Cultivar	Tissue	No. raw reads	RPM
S0739	Solanum lycopersicum	Ailsa Craig	fruit, red ripe (52 days after anthesis)	1	0.1
S0738	Solanum lycopersicum	Ailsa Craig	fruit, breaker (42 days after anthesis)	2	0.27
S0737	Solanum lycopersicum	Ailsa Craig	fruit, mature green (39 days after anthesis)	1	0.12
S0736	Solanum lycopersicum	Ailsa Craig	fruit, immature (17 days after anthesis)	3	0.65
S0735	Solanum lycopersicum	Sunny	leaf , TSWV-infected	115	8.48
S0734	Solanum lycopersicum	IL8-3-1	seedlings, two-week-old	107	82.46
S0733	Solanum lycopersicum	IL8-3	seedlings, two-week-old	27	20.48
S0732	Solanum lycopersicum	IL8-2-1	seedlings, two-week-old	70	49.87
S0731	Solanum lycopersicum	IL8-2	seedlings, two-week-old	122	89.85
S0730	Solanum lycopersicum	IL8-1-3	seedlings, two-week-old	86	53.7
S0729	Solanum lycopersicum	IL8-1D	seedlings, two-week-old	57	36.31
S0728	Solanum lycopersicum	IL8-1-1	seedlings, two-week-old	89	58.66
S0727	Solanum lycopersicum	IL2-5	seedlings, two-week-old	147	89.87
S0726	Solanum lycopersicum	IL1-1	seedlings, two-week-old	115	68.84
S0725	Solanum lycopersicum x S. pennellii	M82 x LA716 (F2)	seedlings, two-week-old , replicate3	12	11.71
S0724	Solanum lycopersicum x S. pennellii	M82 x LA716 (F2)	seedlings, two-week-old , replicate2	20	11.68
S0723	Solanum lycopersicum x S. pennellii	M82 x LA716 (F2)	seedlings, two-week-old , replicate1	11	10.79
S0722	Solanum lycopersicum x S. pennellii	M82 x LA716 (F1)	seedlings, two-week-old , replicate2	30	21.22
S0721	Solanum lycopersicum x S. pennellii	M82 x LA716 (F1)	seedlings, two-week-old , replicate1	38	41.37
S0720	Solanum pennellii	LA716	seedlings, two-week-old , replicate2	23	21.98
S0719	Solanum pennellii	LA716	seedlings, two-week-old , replicate1	16	46.22
S0718	Solanum lycopersicum	M82	seedlings, two-week-old , replicate2	67	46.67
S0717	Solanum lycopersicum	M82	seedlings, two-week-old , replicate1	77	102.75
S0716	Solanum lycopersicum	MicroTom	fruit , 7 days post breaker	164	68.58
S0715	Solanum lycopersicum	MicroTom	fruit , 5 days post breaker	140	143.16
S0714	Solanum lycopersicum	MicroTom	fruit , 3 days post breaker	276	69.47
S0713	Solanum lycopersicum	MicroTom	fruit , breaker stage	687	194.71
S0712	Solanum lycopersicum	MicroTom	fruit , mature green	398	101.82
S0711	Solanum lycopersicum	MicroTom	fruit , 11mm to 14mm in diameter	711	342.49
S0710	Solanum lycopersicum	MicroTom	fruit , 5mm to 7mm in diameter	1367	1135.62
S0709	Solanum lycopersicum	MicroTom	fruit , 1mm to 3mm in diameter	2649	1501.99
S0708	Solanum lycopersicum	MicroTom	flower, open	248	76.52
S0707	Solanum lycopersicum	MicroTom	flower bud, closed bud before flower blooming	623	163.55
S0373	Solanum lycopersicum	Heinz 1706	fruit	1	0.3

Hits on known miRNAs

No hits on known miRNAs were found

Precursor of miRNA M00152

genome hit of precursor				precursor
sequence ID	start	end	strand	sequence	folding energy	miRNA*	structure
SL2.40ch02	45483332	45483501	+	CCAUCUUCCUGGCUAUAUUC CCUUGUAAAGUGUCCUUCUU GUCCGCAUUUGUAGCAUCCC GCUCCUCCUCCACCGCCUCC UUGGCUACAUUCCCUUGUGA AAGAAGGAAGGGGCUGCUAC AAAUGUGGGGAAGAAGGGCA UUUUGGAAGGGAUUGUAGGC AGAGAGAUGG	-98.80	NA	structure
SL2.40ch02	45487029	45487198	+	CCAUCUUCCUGGCUAUAUUC CCUUGUAAAGUGUCCCUCUU CGCCGCAUUUGUAGCAUCCC GCUAUUCCUCCACCGCCUCC CUGGCUACAUUCCCUUGCGA AAGAAGGAGGGGGCUGCUAC AAAUGUGGGGAAGAAGGGCA UUUUGGAAGGGAUUGUAGGC AGAGAGAUGG	-98.30	NA	structure