Tomato Functional Genomics Database (TFGD)

sequence	Length	miRNA family	sRNA ID	target
AUAAAAUUGAACAAUUAGACGGAC	24	NA	S08777387	NA

Sample				No. raw reads	RPM
ID	Organism	Cultivar	Tissue	No. raw reads	RPM
S0739	Solanum lycopersicum	Ailsa Craig	fruit, red ripe (52 days after anthesis)	5	0.49
S0738	Solanum lycopersicum	Ailsa Craig	fruit, breaker (42 days after anthesis)	3	0.4
S0737	Solanum lycopersicum	Ailsa Craig	fruit, mature green (39 days after anthesis)	1	0.12
S0735	Solanum lycopersicum	Sunny	leaf , TSWV-infected	10	0.74
S0716	Solanum lycopersicum	MicroTom	fruit , 7 days post breaker	35	14.64
S0715	Solanum lycopersicum	MicroTom	fruit , 5 days post breaker	9	9.2
S0714	Solanum lycopersicum	MicroTom	fruit , 3 days post breaker	32	8.05
S0713	Solanum lycopersicum	MicroTom	fruit , breaker stage	106	30.04
S0712	Solanum lycopersicum	MicroTom	fruit , mature green	145	37.1
S0711	Solanum lycopersicum	MicroTom	fruit , 11mm to 14mm in diameter	154	74.18
S0710	Solanum lycopersicum	MicroTom	fruit , 5mm to 7mm in diameter	92	76.43
S0709	Solanum lycopersicum	MicroTom	fruit , 1mm to 3mm in diameter	144	81.65
S0708	Solanum lycopersicum	MicroTom	flower, open	233	71.89
S0707	Solanum lycopersicum	MicroTom	flower bud, closed bud before flower blooming	398	104.49
S0373	Solanum lycopersicum	Heinz 1706	fruit	5	1.5
S0372	Solanum lycopersicum	Heinz 1706	flower	6	1.82
S0371	Solanum lycopersicum	Heinz 1706	leaf	4	1.21

No hits on known miRNAs were found

genome hit of precursor				precursor
sequence ID	start	end	strand	sequence	folding energy	miRNA*	structure
SL2.40ch06	43743862	43743962	+	AUAAAAUUGAACAAUUAGAC GGACAUGACAUAAUAACGUA GGAAGUCAUAUAGACACAAA AUUUUCAUGUAUGACGAAUG UGUCUAUCUGUUCAAUUUUA U	-26.90	NA	structure