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Tomato miRNA M00155
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| AGAGACGGACUUAUACUAUACUAA | 24 | NA | S06456488 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 15 | 1.11 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 124 | 51.85 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 18 | 18.41 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 152 | 38.26 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 179 | 50.73 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 170 | 43.49 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 62 | 29.87 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 67 | 55.66 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 89 | 50.46 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 345 | 106.45 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 332 | 87.16 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 7 | 2.1 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 1 | 0.3 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 6 | 1.81 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00155
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch01 | 4634083 | 4633861 | - | AGAGACGGACUUAUACUAUA CUAAUGUUCUAUUACCUCCC UGGACUUACUUUAUAAGUAA UUUUCUACCCCUUUUCGGCC UACGUGGCACUAGGCUGAAA AAAAAAGUCAACCAGCGUUG GUCCCACAAGAUAGUGUCAU GUUGGCCGAAAAGGGGUAGA AAAUCACUUUUAAAAUAAGU UCACGGAGGUAAUAGGACCU UGGUAUAAUAUAAGUGUGUC UCU |
-126.36 | NA | structure |
