 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Tomato miRNA M00165
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| AAGCUGACGGCAUUAGAUUGAUAU | 24 | NA | S02673882 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 1 | 0.07 |
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 14 | 10.79 |
| S0733 | Solanum lycopersicum | IL8-3 | seedlings, two-week-old | 33 | 25.03 |
| S0732 | Solanum lycopersicum | IL8-2-1 | seedlings, two-week-old | 21 | 14.96 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 18 | 13.26 |
| S0730 | Solanum lycopersicum | IL8-1-3 | seedlings, two-week-old | 20 | 12.49 |
| S0729 | Solanum lycopersicum | IL8-1D | seedlings, two-week-old | 12 | 7.64 |
| S0728 | Solanum lycopersicum | IL8-1-1 | seedlings, two-week-old | 15 | 9.89 |
| S0727 | Solanum lycopersicum | IL2-5 | seedlings, two-week-old | 27 | 16.51 |
| S0726 | Solanum lycopersicum | IL1-1 | seedlings, two-week-old | 20 | 11.97 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 38 | 37.08 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 49 | 28.6 |
| S0723 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate1 | 29 | 28.45 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 15 | 10.61 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 30 | 32.66 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 49 | 46.82 |
| S0719 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate1 | 48 | 138.66 |
| S0718 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate2 | 16 | 11.15 |
| S0717 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate1 | 17 | 22.69 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 15 | 6.27 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 15 | 3.78 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 24 | 6.8 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 19 | 4.86 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 11 | 5.3 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 16 | 13.29 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 10 | 5.67 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 16 | 4.94 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 53 | 13.91 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00165
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch01 | 5704071 | 5703912 | - | AAGCUGACGGCAUUAGAUUG AUAUAUGUUACUCACAGUAA UGUUUUACUCAUAAUACGUU ACUUACAGUAACGUUUUAGG CGUAAAACGUUACUCAAAAU AACGUUUUAGGAGUAAAACC GUAUUUACAGUAACGUAUAU CAACCUAACACUGUUAGUUU |
-64.50 | NA | structure |
| SL2.40ch01 | 57488629 | 57488470 | - | AAGCUGACGGCAUUAGAUUG AUAUCCGUUAUUGGUAGUAA CGCUUUACUCCUAAAAUGUU ACUCACAGUAACGUUUUAGG AGUAAAACGUUACUCAAACA AACGUUUUAGGAGUAAAAUG UUACUCAUAAUAACGUAUAU CAACGUAACGUUGUUAGUAU |
-70.00 | NA | structure |
