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Tomato miRNA M00175
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| AGAGACGCACUUAUACUAUACUAA | 24 | NA | S06454254 | click here |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 2 | 0.27 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 1 | 0.12 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 5 | 0.37 |
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 23 | 17.72 |
| S0733 | Solanum lycopersicum | IL8-3 | seedlings, two-week-old | 12 | 9.1 |
| S0732 | Solanum lycopersicum | IL8-2-1 | seedlings, two-week-old | 20 | 14.25 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 17 | 12.52 |
| S0730 | Solanum lycopersicum | IL8-1-3 | seedlings, two-week-old | 23 | 14.36 |
| S0729 | Solanum lycopersicum | IL8-1D | seedlings, two-week-old | 26 | 16.56 |
| S0728 | Solanum lycopersicum | IL8-1-1 | seedlings, two-week-old | 8 | 5.27 |
| S0727 | Solanum lycopersicum | IL2-5 | seedlings, two-week-old | 36 | 22.01 |
| S0726 | Solanum lycopersicum | IL1-1 | seedlings, two-week-old | 27 | 16.16 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 33 | 32.2 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 73 | 42.62 |
| S0723 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate1 | 31 | 30.41 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 33 | 23.34 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 45 | 48.99 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 40 | 38.22 |
| S0719 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate1 | 65 | 187.77 |
| S0718 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate2 | 31 | 21.6 |
| S0717 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate1 | 31 | 41.37 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 7 | 2.93 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 25 | 6.29 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 8 | 2.27 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 17 | 4.35 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 9 | 4.34 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 8 | 6.65 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 15 | 8.51 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 68 | 20.98 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 82 | 21.53 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 1 | 0.3 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 2 | 0.61 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00175
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch12 | 3478527 | 3478746 | + | AGAGACGCACUUAUACUAUA CUAAGGUCCUAUUAUCCCCU GAACUUAUUUUAUAAGUAAU UUUCUAUCCCUUUUCGGCCU ACGUGGCACUAGCUUGAAAA UAAAAGUCAAUCAGCGUUGG ACCCACAAGAUAGUGCCACG UAGGUCAAAAAGGGAUAGAA AAUUAUUAAUAAAAUAAGUU CAGGGAUAAUAGCACCUUAG UAUAGUAUAAGUGUGUCUCU |
-139.06 | miRNA* | structure |
| SL2.40ch01 | 72141149 | 72141370 | + | AGAGACGCACUUAUACUAUA CUAAGGUCUUAUUACCCUCC UGAACUUAUUUUAUAAGUAA UUUUCUAUCCCUUUUUAGUU UACGUGACACUAGUUUGAAA AAAAAAGUCAACCAUCGUUG GACCCACAAGAUAGUGCCAC GUAGGUCGAAAAGGGGUAAA AAAUUCUUAAUAAAAUAAGU UCAGGGGGUAAUAGGACCUU AGUAUAGUAUAAGUGUGUCU CU |
-125.36 | miRNA* | structure |
| SL2.40ch09 | 5993718 | 5993940 | + | AGAGACGCACUUAUACUAUA CUAAAGUCCUAUUACCCCAC UGAACUUAUUUUAUUAAUAA UUUUUACCCCUUUUCGACCU ACGUUGUACUAUCUUGUGAG CUCAACGAUGGUUGACUUUU UUUUUCAAACUAGUGCCACG UAGGCUAAAAAAGGGGUAGA AAAUUACUUAUAAAAUAAGU UUAGGGGGGUAAUAGGAUCU UAGUAUAGCAUAAGUGUGUC UCU |
-116.20 | NA | structure |
| SL2.40ch08 | 55916590 | 55916812 | + | AGAGACGCACUUAUACUAUA CUAAGGUCCUAUUACCCCCU GAACUUAUUUUAUAAGUAAU UCUCUACCCCUUUUUAGCUU ACGCGACACUAGUUUGAAAC AAAAAAAUCAACCAUCGUUG GGCCCACAAGAUAGUGCCAC GUGGGCUAAAAAGGGGUAAA AAAUUAUUAAUAAUAUAAGU UCAUGGGGGUAAUAGGACCU UAGUAUAGUAUAAGUGUGUC UCU |
-129.79 | miRNA* | structure |
| SL2.40ch06 | 18101109 | 18101330 | + | AGAGACGCACUUAUACUAUA CUAAGGUCCUAUUAUCCCCC UGAACUUAUUUUAUAAGUAA UUUUGUACCCCUUUUCAGCC UAUGUGGCACUAUCUUGAAA AAAAAGUCAACCAACAUCGG GCCCACAAGAUAGUGCCACG UAGGCCUUACAAGGAUAGAA AAUUCUUAAUAAUUCAAGUU CAGGGGAGUAAUAGGACGUU AAUAUAGUAUAACUGUGUCU CU |
-108.10 | NA | structure |
| SL2.40ch03 | 28720815 | 28720597 | - | AGAGACGCACUUAUACUAUA CUAAGGUCAUAUUACCCCCU GAACUUAUUUUAUAAGUAAU UUUCUACAACUUUUAGAAUA CGUGGCACUAGUUUGAAAAA AAAGUCAACCAACGUUGGGC CCACAAGAUAGUGUCACGUA GGACGAAAAGGGGUAGAAAA UUAUUAAUAAAAUAAGUUCA GGGGGUAAUAGGACCUUAGU AUAGUAUAAGUGUGUCUCU |
-128.04 | miRNA* | structure |
| SL2.40ch09 | 3339502 | 3339280 | - | AGAGACGCACUUAUACUAUA CUAAGGUCCUAUUACCCCUG AAAUUAUUUUAUUAAUAAUU UUUUACCCCUUUUCNGCCUA CNUGGCACUAUCUUGUGGGU CCAACGAUGGUUGACUUUUU UUUUCAAACUAGUGCCACGU AGGCAAAAAAAAAAGGGAUA AAAAAUUACUUAUAAAAUAA GUUCAGGGGUAAUAGGACCU UAUUAUAGUAUAAGUGUGUC CCU |
-115.70 | NA | structure |
| SL2.40ch03 | 38799122 | 38798902 | - | AGAGACGCACUUAUACUAUA CUAAGGUCCUAUUACUAUCC UAAACUUAUUUUUUAAAUAA UUUCCUACCCCUUUUUGGCC UACGUGACACUAUCUUGUGG GCCAAACGUUGGUUGACUUU UUUUUCAAGCUAGUGUCACG UGGGCCAAAAGGGGUAGAAA AUUACUUAUAAGAUAAGUUU UGGGAGAUAAUAGGACCUUA GUAUAGUAUAAGUGUGUUUC U |
-130.30 | NA | structure |
| SL2.40ch07 | 54416359 | 54416139 | - | AGAGACGCACUUAUACUAUA CUAAGAUCCUAUUACCCCCU AAACUUAUUUUAUCAAUAAU UUUCAACCCCUUUUCGGCAU ACGUGGCACUAUGUAGUGGG UCUAAGGUUGGUUGAAUUUU UUUCCAAACUAAUGCCACAU AGGCCGAAAAGGGGUAGAAA AAUAAUUAUAAAAUAAGUUC AGGGGGGUAAUAGGACCUUA GUAUAGUAUAAAUGUGUCUC U |
-116.80 | miRNA* | structure |
| SL2.40ch03 | 41191621 | 41191403 | - | AGAGACGCACUUAUACUAUA CUAAGGUCCUAUUACCCCUG AACUUAUUUUGUAAAUAAUU UACUACCCCUUUUUGACCUA CGUGGCACUAUCUUGUGGGU CCACGCGAGUUGACAUUUUU UUUCAAGAUAGGGCCACGUA GGAUGAAAAGGGAUAGAAAA UUAUUUAUAAAAUAAGUUUA GGAGGUAAUAGGACCUUAGU AUGAUAUAAGUGUGUCUCU |
-136.70 | NA | structure |
| SL2.40ch04 | 53972048 | 53971826 | - | AGAGACGCACUUAUACUAUA CUAAAGUCCUAUUACCCCCC UGAACUUAUUUUAUUAAUAA UUUUUUACCCCUUUUCGACC UACGUGGCACUAUCUUGUGG GCCCAACGAUGAUUGACUUU UUUUCUCAAACUCGUGCCAC AUAGGCAAAAAAGGGGUAGA AAAUUACUUAUAAAAUAAGU UCAGGGGGGUAAUAGGACCU UAGAAUAAUAUAAGUGUGUC UCU |
-121.40 | NA | structure |
