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Tomato miRNA M00178
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| AAAAGCUGACGGCGUUAGAUUGAU | 24 | NA | S00324760 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 1 | 0.1 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 1 | 0.13 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 3 | 0.35 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 15 | 1.11 |
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 131 | 100.95 |
| S0733 | Solanum lycopersicum | IL8-3 | seedlings, two-week-old | 53 | 40.21 |
| S0732 | Solanum lycopersicum | IL8-2-1 | seedlings, two-week-old | 62 | 44.17 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 65 | 47.87 |
| S0730 | Solanum lycopersicum | IL8-1-3 | seedlings, two-week-old | 79 | 49.33 |
| S0729 | Solanum lycopersicum | IL8-1D | seedlings, two-week-old | 71 | 45.23 |
| S0728 | Solanum lycopersicum | IL8-1-1 | seedlings, two-week-old | 62 | 40.86 |
| S0727 | Solanum lycopersicum | IL2-5 | seedlings, two-week-old | 83 | 50.74 |
| S0726 | Solanum lycopersicum | IL1-1 | seedlings, two-week-old | 76 | 45.49 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 104 | 101.47 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 151 | 88.15 |
| S0723 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate1 | 77 | 75.53 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 171 | 120.94 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 75 | 81.65 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 144 | 137.59 |
| S0719 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate1 | 71 | 205.1 |
| S0718 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate2 | 62 | 43.19 |
| S0717 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate1 | 44 | 58.72 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 7 | 2.93 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 5 | 5.11 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 16 | 4.03 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 32 | 9.07 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 45 | 11.51 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 15 | 7.23 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 22 | 18.28 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 18 | 10.21 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 108 | 33.32 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 210 | 55.13 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 2 | 0.6 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00178
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch03 | 58286815 | 58286945 | + | AAAAGCUGACGGCGUUAGAU UGAUAUUUGUACUCACAAAA ACGUUUUAGGAUUAAAAUGU UACUCAAAAUAACGUUUAAG GAGUAAAACGUUACUUACAG UAACAUAUAUCAACCUAAUG UUGUUACUUUU |
-38.50 | NA | structure |
| SL2.40ch04 | 56604393 | 56604576 | + | AAAAGCUGACGGCGUUAGAU UGAUAUACAUUACUCACAAU AACGAUUUACUCCUAACACG UUACUCACAGUAAUGUUUUA GGAGUAAAACGUUACUCAAA CUAAAGUUUUAGUACUCGAA AUAACGUUUUAAGAGUACAA CUUUUCUCACGGUAACAUAU AUCAACCUAACACUGUUAGU UUUU |
-66.66 | NA | structure |
| SL2.40ch02 | 48337945 | 48337822 | - | AAAAGCUGACGGCGUUAGAU UGAUUUGCGUUACUUACAGU AACGUUUUACUACUAAAACG UUAUUCACAGUAACGUUUAC CUUACUUACAGUAACACAUA UCAACCUAACGCCGUCAGUU UUAU |
-53.70 | NA | structure |
| SL2.40ch04 | 4377589 | 4377426 | - | AAAAGCUGACGGCGUUAGAU UGAUAUACAUUACUCAUAGU AACGUUUUACUCCUAAAACG UUAAUGUGAGUAACGUCUUA CUCUUAAAACGUUACUUACA AUAACGUUUUAGGAGUAAAA UGUUACUCACAGUAACGUAU AUCAACCUAACACUGUUAAU UUUU |
-83.20 | NA | structure |
| SL2.40ch02 | 38576912 | 38576779 | - | AAAAGCUGACGGCGUUAGAU UGAUAUACGCUAUUCACAGU AACGUUUUAGGAGUAAAACG UUAUUCAAAAAUAACGUUUU AGGAGUAAAGCGUUACUUAC GGUAACAUAUACUAACCUAA CGUUGUUAGUUUUU |
-48.80 | NA | structure |
| SL2.40ch03 | 44795141 | 44794980 | - | AAAAGCUGACGGCGUUAGAU UGAUGUACGUUACUCAUAGU AACGUUUUACUCUAAACGUU AUUGUGAGUAACGUUUUAGA AGUAAAACAUUACUCAAAAA AAUGUUUUAGGAGUAAAACG UUACUAUGAGUAACGUAUAA CAACCUAACGCCGUCAGUUU UU |
-95.00 | NA | structure |
