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Tomato miRNA M00190
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| UGUGGGGAAGAAGGGCAUUUUGGA | 24 | NA | S24119684 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 1 | 0.1 |
| S0738 | Solanum lycopersicum | Ailsa Craig | fruit, breaker (42 days after anthesis) | 7 | 0.93 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 2 | 0.23 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 2 | 0.43 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 51 | 3.76 |
| S0734 | Solanum lycopersicum | IL8-3-1 | seedlings, two-week-old | 12 | 9.25 |
| S0733 | Solanum lycopersicum | IL8-3 | seedlings, two-week-old | 3 | 2.28 |
| S0732 | Solanum lycopersicum | IL8-2-1 | seedlings, two-week-old | 12 | 8.55 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 14 | 10.31 |
| S0730 | Solanum lycopersicum | IL8-1-3 | seedlings, two-week-old | 12 | 7.49 |
| S0729 | Solanum lycopersicum | IL8-1D | seedlings, two-week-old | 7 | 4.46 |
| S0728 | Solanum lycopersicum | IL8-1-1 | seedlings, two-week-old | 10 | 6.59 |
| S0727 | Solanum lycopersicum | IL2-5 | seedlings, two-week-old | 15 | 9.17 |
| S0726 | Solanum lycopersicum | IL1-1 | seedlings, two-week-old | 5 | 2.99 |
| S0725 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate3 | 18 | 17.56 |
| S0724 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate2 | 3 | 1.75 |
| S0723 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F2) | seedlings, two-week-old , replicate1 | 6 | 5.89 |
| S0722 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate2 | 9 | 6.37 |
| S0721 | Solanum lycopersicum x S. pennellii | M82 x LA716 (F1) | seedlings, two-week-old , replicate1 | 7 | 7.62 |
| S0720 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate2 | 3 | 2.87 |
| S0719 | Solanum pennellii | LA716 | seedlings, two-week-old , replicate1 | 1 | 2.89 |
| S0718 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate2 | 7 | 4.88 |
| S0717 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate1 | 15 | 20.02 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 9 | 3.76 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 3 | 3.07 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 30 | 7.55 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 68 | 19.27 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 17 | 4.35 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 74 | 35.65 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 318 | 264.18 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 743 | 421.28 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 18 | 5.55 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 22 | 5.78 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00190
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch02 | 45487052 | 45487175 | + | UGUAAAGUGUCCCUCUUCGC CGCAUUUGUAGCAUCCCGCU AUUCCUCCACCGCCUCCCUG GCUACAUUCCCUUGCGAAAG AAGGAGGGGGCUGCUACAAA UGUGGGGAAGAAGGGCAUUU UGGA |
-63.50 | NA | structure |
| SL2.40ch02 | 45483355 | 45483478 | + | UGUAAAGUGUCCUUCUUGUC CGCAUUUGUAGCAUCCCGCU CCUCCUCCACCGCCUCCUUG GCUACAUUCCCUUGUGAAAG AAGGAAGGGGCUGCUACAAA UGUGGGGAAGAAGGGCAUUU UGGA |
-64.00 | NA | structure |
