 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Tomato miRNA M00191
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| ACAUGUGGGACCAGCGCGGAGUGA | 24 | NA | S04789486 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0739 | Solanum lycopersicum | Ailsa Craig | fruit, red ripe (52 days after anthesis) | 5 | 0.49 |
| S0737 | Solanum lycopersicum | Ailsa Craig | fruit, mature green (39 days after anthesis) | 6 | 0.7 |
| S0736 | Solanum lycopersicum | Ailsa Craig | fruit, immature (17 days after anthesis) | 21 | 4.52 |
| S0735 | Solanum lycopersicum | Sunny | leaf , TSWV-infected | 5918 | 436.51 |
| S0731 | Solanum lycopersicum | IL8-2 | seedlings, two-week-old | 1 | 0.74 |
| S0730 | Solanum lycopersicum | IL8-1-3 | seedlings, two-week-old | 1 | 0.62 |
| S0717 | Solanum lycopersicum | M82 | seedlings, two-week-old , replicate1 | 1 | 1.33 |
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 4 | 1.67 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 9 | 2.27 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 11 | 3.12 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 9 | 2.3 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 3 | 1.45 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 1 | 0.57 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 1 | 0.31 |
| S0373 | Solanum lycopersicum | Heinz 1706 | fruit | 6 | 1.8 |
| S0372 | Solanum lycopersicum | Heinz 1706 | flower | 4 | 1.21 |
| S0371 | Solanum lycopersicum | Heinz 1706 | leaf | 5 | 1.51 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00191
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch05 | 275440 | 275632 | + | UCACUCCGUCCUAGUGCCAC AUGUCCCCCCUUUCUCUUAA AUUUUUUAUUAGGAACUUAU UACUUUCCAAGAGCCGCAUA CUAUACACAUCACACUUCUA AGUAUAGUAUAUGGUUCUUG UCAAGUAAUUAGUGUCCAUA UAUAUUGCUACAAAAUUUAA GAGCGGGGGACAUGUGGGAC CAGCGCGGAGUGA |
-91.46 | NA | structure |
