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Tomato miRNA M00193
| sequence | Length | miRNA family | sRNA ID | target |
|---|---|---|---|---|
| AGUUGACGGCGUUAGAUUGAUACA | 24 | NA | S08637551 | NA |
Digital expression
| Sample | No. raw reads | RPM | |||
|---|---|---|---|---|---|
| ID | Organism | Cultivar | Tissue | ||
| S0716 | Solanum lycopersicum | MicroTom | fruit , 7 days post breaker | 312 | 130.47 |
| S0715 | Solanum lycopersicum | MicroTom | fruit , 5 days post breaker | 75 | 76.69 |
| S0714 | Solanum lycopersicum | MicroTom | fruit , 3 days post breaker | 440 | 110.75 |
| S0713 | Solanum lycopersicum | MicroTom | fruit , breaker stage | 1041 | 295.04 |
| S0712 | Solanum lycopersicum | MicroTom | fruit , mature green | 1013 | 259.17 |
| S0711 | Solanum lycopersicum | MicroTom | fruit , 11mm to 14mm in diameter | 73 | 35.16 |
| S0710 | Solanum lycopersicum | MicroTom | fruit , 5mm to 7mm in diameter | 27 | 22.43 |
| S0709 | Solanum lycopersicum | MicroTom | fruit , 1mm to 3mm in diameter | 195 | 110.57 |
| S0708 | Solanum lycopersicum | MicroTom | flower, open | 1583 | 488.43 |
| S0707 | Solanum lycopersicum | MicroTom | flower bud, closed bud before flower blooming | 2298 | 603.29 |
Hits on known miRNAs
| No hits on known miRNAs were found |
Precursor of miRNA M00193
| genome hit of precursor | precursor | ||||||
|---|---|---|---|---|---|---|---|
| sequence ID | start | end | strand | sequence | folding energy | miRNA* | structure |
| SL2.40ch04 | 53972450 | 53972291 | - | AGUUGACGGCGUUAGAUUGA UACACGUUACUUAGACUAAC GUUUUACUCCUAAAAUGUUA UUCACAGUAAUGUUUUAGGA GUGAAACGUUACUCAAAAUG ACAUUAUAGGAGUAAAACGU UACUUACAGUUACGUAUAUC AAUCUAACGCUCUUAGUUCU |
-73.10 | NA | structure |
