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Tomato epigenome database provides the following functions:
DNA methylation search: After entering gene or chromosome information, user can get numbers of methylated C, unmethylated C and the ratio of 5mC/total C from 4 tomato samples in different stage, ratio greater than 50% will be highligted. Please click here for more detailed information.
Plot methylation files: Using gene or chromosome positions, user can get a plot of methylation profiles, user can choose particular context and samples before plotting the profiles. The website also provides several bin size options to cater user needs. Please click here for more detailed information.
Search genes: After entering the gene annotation keyword, user can get all genes which contains the keyword, each gene is connected to methylation table including 2000bp promoter region. Please click here for more detailed information.
Blast: User can use their own sequence to blast against tomato cds or protein sequence database. Please click here for more detailed information.
Link to Genome browser: Tomato epigenome database website also provides link to generic genome browser according to user defined gene positions or chromosome postions, user can view the different epigenomic data on Genome browser such us methylation data, chip-seq data. . Please click here for more detailed information.
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