Tomato Functional Genomics Database (TFGD)

TFGD

Home

Expression

Metabolite

sRNA

Links

Contact

Expression of 1-1-1.1.17.11

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.01492	0.901
27DAP/17DAP	0.91467	0.807
39DAP/27DAP	1.14901	0.655
41DAP/39DAP	1.15912	0.85
42DAP/41DAP	1.02525	1
43DAP/42DAP	0.91305	0.858
47DAP/43DAP	1.28399	0.702
52DAP/47DAP	0.87409	0.651
57DAP/52DAP	1.17427	0.977

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.0576	0.96
17DAP/reference	1.82845	0.172
27DAP/reference	1.20736	0.539
39DAP/reference	1.1177	0.828
41DAP/reference	1.28563	0.029
42DAP/reference	1.11363	0.352
43DAP/reference	1.13428	0.445
47DAP/reference	0.90469	0.046
52DAP/reference	1.21067	0.023
57DAP/reference	1.03681	0.853

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.16086	0.06
27DAP/17DAP	0.96951	0.782
39DAP/27DAP	0.88646	0.076
41DAP/39DAP	1.01679	0.853
42DAP/41DAP	0.95059	0.637
43DAP/42DAP	1.01745	0.699
47DAP/43DAP	1.06846	0.65
52DAP/47DAP	1.03899	0.856
57DAP/52DAP	0.89979	0.256
57DAP/7DAP	0.88345	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.84515	0.104
17DAP/reference	0.78132	0.02
27DAP/reference	0.85306	0.076
39DAP/reference	0.83078	0.043
41DAP/reference	0.95217	0.357
42DAP/reference	0.72732	0.034
43DAP/reference	0.87358	0.069
47DAP/reference	0.97313	0.671
52DAP/reference	0.94629	0.332
57DAP/reference	0.77113	0.022

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.5612	0.47
17DAP/reference	1.31068	0.092
27DAP/reference	1.22017	0.396
39DAP/reference	0.85856	0.25
41DAP/reference	1.28369	0.047
42DAP/reference	1.45151	0.259
43DAP/reference	1.10121	0.485
47DAP/reference	1.11351	0.148
52DAP/reference	1.08874	0.444
57DAP/reference	1.47029	0.112

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.80224	0.214
17DAP/reference	1.14029	0.612
27DAP/reference	0.85548	0.27
39DAP/reference	1.01246	0.819
41DAP/reference	0.72358	0.096
42DAP/reference	0.81981	0.22
43DAP/reference	0.75992	0.037
47DAP/reference	1.05638	0.501
52DAP/reference	0.78901	0.141
57DAP/reference	1.01166	0.814

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.65016	1
26DAP/20DAP	0.99047	1
34DAP/26DAP	0.92243	0.666
51DAP/34DAP	0.69351	0.061
52DAP/51DAP	1.04653	0.638
53DAP/52DAP	0.93888	0.695
55DAP/53DAP	1.19869	0.407
57DAP/55DAP	1.08463	0.875
62DAP/57DAP	1.12925	0.257
68DAP/62DAP	0.80041	0.345
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.29748	0.061

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	1.20009	0.166
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.09643	1
IL2-6/WTpooled	1.16068	0.788
IL7-5/WTpooled	0.83218	N/A
IL7-3/WTpooled	1.11536	1
IL12-4/WTpooled	0.86781	0.71
IL1-4/WTpooled	0.92292	0.834
WT/WTpooled	0.94326	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	1.09103	0.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.12288	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	1.03013	1
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	0.58091	0.023
DC3000 delta B/DC3000 delta AB	0.60145	0.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	0.99603	1
Var 0h	1.23574	0.782
Var 12h I row2-row1	0.9206	0.338
Var 12h NI row2-row1	1.08757	0.649
Var 36h I row2-row1	1.15158	0.41
Var 36h NI row2-row1	0.79146	0.478
Var 60h I row2-row1	1.47754	0.543
Var 60h NI row2-row1	0.88652	0.69
Time course 0hI-0hNI	1.0139	0.852
Time course 12hI-12hNI	1.0027	1
Time course 36hI-36hNI	1.41524	0.005
Time course 60hI-60hNI	1.08395	1

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	1.27356	0.92

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.42568	0.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	1.3813	0.126