TFGD
Home Expression Metabolite sRNA Links Contact

Expression of 1-1-1.1.19.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.003040.858
27DAP/17DAP0.956220.922
39DAP/27DAP1.409350.22
41DAP/39DAP0.779750.258
42DAP/41DAP0.956741
43DAP/42DAP1.286270.629
47DAP/43DAP0.863050.55
52DAP/47DAP1.105150.965
57DAP/52DAP1.216280.95

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/referenceN/AN/A
17DAP/reference0.905260.737
27DAP/reference0.5864N/A
39DAP/reference1.11535N/A
41DAP/reference0.56993N/A
42DAP/reference0.914060.225
43DAP/referenceN/AN/A
47DAP/reference1.142120.773
52DAP/reference1.04647N/A
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.968240.595
27DAP/17DAP1.036440.842
39DAP/27DAP1.026430.654
41DAP/39DAP0.961910.747
42DAP/41DAP0.970850.757
43DAP/42DAP0.986790.801
47DAP/43DAP1.024450.848
52DAP/47DAP0.989550.93
57DAP/52DAP1.065690.567
57DAP/7DAP1.070861

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.0031
17DAP/reference0.995860.518
27DAP/reference0.980410.348
39DAP/reference1.02230.198
41DAP/reference1.007541
42DAP/reference1.030480.174
43DAP/reference1.018730.672
47DAP/reference1.053760.659
52DAP/reference1.014921
57DAP/reference0.99610.53

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.889130.532
17DAP/reference1.031420.924
27DAP/reference0.967370.501
39DAP/reference0.979450.539
41DAP/reference0.965660.451
42DAP/reference1.008131
43DAP/reference0.954880.561
47DAP/reference1.038880.965
52DAP/reference1.075631
57DAP/reference0.825290.005

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.97410.098
17DAP/reference0.940680.398
27DAP/reference1.084910.357
39DAP/reference0.948040.111
41DAP/reference0.984790.331
42DAP/reference0.966410.445
43DAP/reference1.066370.608
47DAP/reference0.778730.049
52DAP/reference0.984840.763
57DAP/reference0.991660.742

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.801481
26DAP/20DAP1.085460.598
34DAP/26DAP0.91770.531
51DAP/34DAP0.908890.292
52DAP/51DAP0.998881
53DAP/52DAP1.025750.868
55DAP/53DAP1.065310.782
57DAP/55DAP0.971880.748
62DAP/57DAP1.290520.257
68DAP/62DAP0.991110.914
68DAP/14DAP1.71959N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.061560.369

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.127340.69
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato2.80627N/A
Mature Eggplant/Ripe Tomato1.165221

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.196520.742
1-1-2/M821.07731
12-2/M820.954330.955
12-4/M821.261461
1-3/M820.89031N/A
2-1-1/M821.083430.236
2-1/M821.127991
2-6/M821.000471
3-2/M820.96041
4-1-1/M820.824251
4-1/M821.271411
4-3-2/M820.80287N/A
4-3/M820.908471
5-3/M820.952881
6-2/M821.03857N/A
6-3/M821.001921
7-1/M820.65582N/A
7-2/M820.979471
9-3-2/M821.09476N/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.175890.493
IL2-6/WTpooled1.206890.531
IL7-5/WTpooled0.82931
IL7-3/WTpooled1.152221
IL12-4/WTpooled1.448330.522
IL1-4/WTpooled0.974271
WT/WTpooled0.99161

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.097630.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.995791
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.098041
DC3000/delta hrp 24h1.115070.283

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.928320.11
DC3000 delta B/DC3000 delta AB0.917790.236

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.88941
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.992581
Var 0h1.008661
Var 12h I row2-row10.990071
Var 12h NI row2-row10.981530.906
Var 36h I row2-row10.961231
Var 36h NI row2-row10.918810.522
Var 60h I row2-row11.131910.543
Var 60h NI row2-row10.931330.818
Time course 0hI-0hNI0.972950.801
Time course 12hI-12hNI1.019070.811
Time course 36hI-36hNI1.138210.044
Time course 60hI-60hNI1.017181

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)0.961571

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.905610.277

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.100291

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.305131