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Expression of 1-1-1.1.4.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.093930.798
27DAP/17DAP1.334670.688
39DAP/27DAP1.517370.183
41DAP/39DAP0.597330.053
42DAP/41DAP0.890181
43DAP/42DAP1.22540.892
47DAP/43DAP1.193330.746
52DAP/47DAP1.080190.964
57DAP/52DAP1.288240.853

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.443180.008
17DAP/reference1.317510.039
27DAP/reference1.017790.966
39DAP/reference0.869130.254
41DAP/reference1.069470.48
42DAP/reference1.863640.001
43DAP/reference1.19734N/A
47DAP/reference1.602890.001
52DAP/reference0.870210.244
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.665370.041
27DAP/17DAP0.89670.39
39DAP/27DAP0.804050.04
41DAP/39DAP1.312250.531
42DAP/41DAP0.979280.768
43DAP/42DAP0.679330.022
47DAP/43DAP1.039680.848
52DAP/47DAP0.881630.243
57DAP/52DAP0.942970.641
57DAP/7DAP1.17032N/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.549490.027
17DAP/reference1.566080.006
27DAP/reference1.946460.006
39DAP/reference1.857560.005
41DAP/reference1.61450.009
42DAP/reference1.668840.016
43DAP/reference1.366580.008
47DAP/reference1.792710.014
52DAP/reference1.829490.007
57DAP/reference1.826040.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.13230.477
17DAP/reference1.772510.007
27DAP/reference2.053310.013
39DAP/reference2.066040.011
41DAP/reference1.301950.063
42DAP/reference1.595930.008
43DAP/reference1.312190.424
47DAP/reference1.792230.098
52DAP/reference1.417960.01
57DAP/reference1.254170.049

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.064180.016
17DAP/reference1.096720.612
27DAP/reference1.444760.018
39DAP/reference1.531680.005
41DAP/reference1.395490.014
42DAP/reference2.592940.008
43DAP/reference2.496490.006
47DAP/reference1.197730.133
52DAP/reference1.768760.041
57DAP/reference1.364860.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.281590.966
26DAP/20DAP1.011681
34DAP/26DAP0.987561
51DAP/34DAP0.691670.274
52DAP/51DAP0.884581
53DAP/52DAP0.739080.071
55DAP/53DAP1.097821
57DAP/55DAP2.171140.745
62DAP/57DAP1.124520.008
68DAP/62DAP1.188530.813
68DAP/14DAP1.43420.578

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker4.335440.015

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.368340.058
Mature Green Tomato/Ripe Tomato1.693090.095
Immature Eggplant/Mature Eggplant1.060030.239
Ripe Pepper/Ripe Tomato0.597660.293
Mature Eggplant/Ripe Tomato1.367750.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.846610.613
1-1-2/M821.156870.977
12-2/M820.82660.535
12-4/M820.914191
1-3/M821.300150.479
2-1-1/M820.977821
2-1/M820.886351
2-6/M820.904250.501
3-2/M821.26758N/A
4-1-1/M821.491940.968
4-1/M820.7192N/A
4-3-2/M821.21807N/A
4-3/M821.426291
5-3/M821.215060.572
6-2/M821.168411
6-3/M820.80386N/A
7-1/M82N/AN/A
7-2/M821.159210.385
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.041930.277
IL2-6/WTpooled0.736470.473
IL7-5/WTpooled0.911651
IL7-3/WTpooled1.037481
IL12-4/WTpooled1.088441
IL1-4/WTpooled0.856170.699
WT/WTpooled1.061611

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.169810.309

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.952041
DC3000/delta hrp 6h0.895630.95
DC3000/delta hrp 12h0.988261
DC3000/delta hrp 24h1.284440.041

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.205740.208
DC3000 delta B/DC3000 delta AB1.089680.625

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.924441
Exp 36h1.20831
Exp 60h1.050641

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.937671
Var 0h1.150550.98
Var 12h I row2-row10.760160.338
Var 12h NI row2-row11.004431
Var 36h I row2-row11.131970.908
Var 36h NI row2-row11.339941
Var 60h I row2-row11.191920.523
Var 60h NI row2-row10.972731
Time course 0hI-0hNI0.934210.418
Time course 12hI-12hNI0.856610.079
Time course 36hI-36hNI0.720040.023
Time course 60hI-60hNI0.084620.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.93870.391
transgenic ySAMdc/azygous control (breaker)1.321230.248
transgenic ySAMdc/azygous control (red)1.273720.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.153220.115

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.035431

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.756270.172
Manapal/WT (break)1.133271
Manapal/WT (red)1.821840.133