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Expression of 1-1-1.3.10.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.050980.912
27DAP/17DAP1.156860.849
39DAP/27DAP0.940030.631
41DAP/39DAP1.309680.356
42DAP/41DAP0.913471
43DAP/42DAP1.004260.937
47DAP/43DAP0.996180.926
52DAP/47DAP1.327940.584
57DAP/52DAP0.850630.844

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.987060.645
17DAP/reference1.071210.585
27DAP/reference1.031580.782
39DAP/reference1.130510.04
41DAP/reference1.104080.085
42DAP/reference1.03741
43DAP/reference1.051970.596
47DAP/reference0.824790.042
52DAP/reference0.932190.195
57DAP/reference0.897120.112

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.856330.442
27DAP/17DAP0.850640.878
39DAP/27DAP1.157450.56
41DAP/39DAP0.87840.446
42DAP/41DAP1.178750.81
43DAP/42DAP1.018821
47DAP/43DAP1.420280.833
52DAP/47DAP1.192580.927
57DAP/52DAP1.092690.891
57DAP/7DAP0.33996N/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.000770.758
17DAP/reference1.034951
27DAP/reference1.144160.371
39DAP/reference1.304210.133
41DAP/reference1.041381
42DAP/reference1.255810.132
43DAP/reference1.041711
47DAP/reference0.943770.383
52DAP/reference1.14610.352
57DAP/reference1.026931

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.240060.164
17DAP/reference1.395820.014
27DAP/reference1.133370.427
39DAP/reference0.940820.392
41DAP/reference0.870420.124
42DAP/reference0.900990.135
43DAP/reference1.602110.089
47DAP/reference0.960820.302
52DAP/reference1.016181
57DAP/reference1.146130.437

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.029660.963
17DAP/reference1.1460.133
27DAP/reference0.972560.624
39DAP/reference1.258350.134
41DAP/reference1.132120.276
42DAP/reference1.098240.51
43DAP/reference1.132890.459
47DAP/reference1.028180.994
52DAP/reference0.857520.189
57DAP/reference0.980530.583

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.173850.966
26DAP/20DAP1.499070.504
34DAP/26DAP1.035261
51DAP/34DAP0.867380.631
52DAP/51DAP1.181220.186
53DAP/52DAP0.657160.049
55DAP/53DAP1.13210.287
57DAP/55DAP0.903230.577
62DAP/57DAP0.967980.994
68DAP/62DAP1.215960.813
68DAP/14DAP0.901261

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.055460.908

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.145010.113
Mature Green Tomato/Ripe Tomato0.847450.411
Immature Eggplant/Mature Eggplant2.320450.239
Ripe Pepper/Ripe Tomato1.678411
Mature Eggplant/Ripe Tomato1.195691

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.980080.961
1-1-2/M820.862820.958
12-2/M821.183441
12-4/M821.194591
1-3/M820.919160.501
2-1-1/M821.03551
2-1/M82N/AN/A
2-6/M821.148110.594
3-2/M82N/AN/A
4-1-1/M821.21387N/A
4-1/M821.41852N/A
4-3-2/M82N/AN/A
4-3/M820.71412N/A
5-3/M820.998881
6-2/M820.69786N/A
6-3/M821.132291
7-1/M821.0229N/A
7-2/M820.897970.796
9-3-2/M820.99833N/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.99371
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.957221
IL1-4/WTpooled1.568211
WT/WTpooled0.742831

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.229930.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.036190.921
DC3000/delta hrp 6h0.794760.757
DC3000/delta hrp 12h1.156741
DC3000/delta hrp 24h1.077970.595

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.593210.042
DC3000 delta B/DC3000 delta AB0.864290.766

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.007011
Exp 36h1.061491
Exp 60h1.015031

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.90948N/A
Var 0h1.065221
Var 12h I row2-row10.809980.565
Var 12h NI row2-row14.99091
Var 36h I row2-row11.05571
Var 36h NI row2-row10.912020.329
Var 60h I row2-row10.90380.832
Var 60h NI row2-row10.852370.932
Time course 0hI-0hNI1.066730.833
Time course 12hI-12hNI0.986830.94
Time course 36hI-36hNI1.163610.008
Time course 60hI-60hNI3.122410.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.116110.325
transgenic ySAMdc/azygous control (breaker)0.790480.124
transgenic ySAMdc/azygous control (red)0.930971

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.985640.248

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.87660.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.902471
Manapal/WT (break)1.122141
Manapal/WT (red)1.071011