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Expression of 1-1-1.3.15.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.954540.64
27DAP/17DAP1.007780.926
39DAP/27DAP1.031851
41DAP/39DAP1.026710.844
42DAP/41DAP0.97061
43DAP/42DAP1.100860.923
47DAP/43DAP1.119180.278
52DAP/47DAP1.171940.639
57DAP/52DAP1.046310.935

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.995430.743
17DAP/reference0.899660.018
27DAP/reference1.024520.735
39DAP/reference0.99770.991
41DAP/reference0.948480.341
42DAP/reference1.107270.011
43DAP/reference1.001121
47DAP/reference1.079030.06
52DAP/reference1.032890.498
57DAP/reference1.02810.392

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.065220.398
27DAP/17DAP0.935460.295
39DAP/27DAP1.055220.663
41DAP/39DAP1.071060.656
42DAP/41DAP0.972820.734
43DAP/42DAP0.956990.447
47DAP/43DAP0.994510.985
52DAP/47DAP0.993530.959
57DAP/52DAP1.057250.688
57DAP/7DAP1.038071

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.967170.326
17DAP/reference0.975020.253
27DAP/reference0.911540.019
39DAP/reference0.928230.02
41DAP/reference0.914040.042
42DAP/reference1.001731
43DAP/reference0.984920.421
47DAP/reference1.110020.214
52DAP/reference0.921550.027
57DAP/reference0.986130.25

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.009970.776
17DAP/reference1.083690.396
27DAP/reference1.038580.726
39DAP/reference1.022750.912
41DAP/reference0.925530.13
42DAP/reference1.018630.969
43DAP/reference1.008821
47DAP/reference1.05610.108
52DAP/reference0.950190.187
57DAP/reference0.946440.298

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.952930.147
17DAP/reference0.958180.268
27DAP/reference0.953580.045
39DAP/reference0.915350.046
41DAP/reference0.92840.058
42DAP/reference1.033420.716
43DAP/reference1.10720.326
47DAP/reference0.97330.306
52DAP/reference1.087740.369
57DAP/reference1.270360.064

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.027540.966
26DAP/20DAP1.113390.7
34DAP/26DAP0.946760.338
51DAP/34DAP1.067890.524
52DAP/51DAP1.014850.821
53DAP/52DAP0.913240.505
55DAP/53DAP0.984480.876
57DAP/55DAP0.907540.677
62DAP/57DAP1.088020.445
68DAP/62DAP0.992320.885
68DAP/14DAP1.15810.384

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.047560.326

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.121570.063
Mature Green Tomato/Ripe Tomato1.102370.166
Immature Eggplant/Mature Eggplant0.785110.074
Ripe Pepper/Ripe Tomato0.892181
Mature Eggplant/Ripe Tomato1.666730.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.938350.944
1-1-2/M820.992751
12-2/M820.874390.955
12-4/M821.019021
1-3/M821.091220.248
2-1-1/M820.904170.465
2-1/M821.053871
2-6/M820.935571
3-2/M821.053170.84
4-1-1/M820.951341
4-1/M821.048751
4-3-2/M820.886230.487
4-3/M820.917071
5-3/M820.987131
6-2/M820.923641
6-3/M820.992361
7-1/M820.987591
7-2/M820.935060.881
9-3-2/M821.073511

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.395420.395
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.34260.362
IL12-4/WTpooled1.237660.386
IL1-4/WTpooled1.289730.399
WT/WTpooled0.99751

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.03161

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.984191
DC3000/delta hrp 6h1.0010.95
DC3000/delta hrp 12h1.042961
DC3000/delta hrp 24h1.090250.336

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.159160.073
DC3000 delta B/DC3000 delta AB1.096110.398

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.084631
Exp 36h1.011331
Exp 60h1.192450.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.040591
Var 0h0.860971
Var 12h I row2-row11.172040.443
Var 12h NI row2-row11.003761
Var 36h I row2-row11.260031
Var 36h NI row2-row10.999381
Var 60h I row2-row11.018541
Var 60h NI row2-row11.095210.904
Time course 0hI-0hNI1.055420.764
Time course 12hI-12hNI0.876380.116
Time course 36hI-36hNI0.94940.139
Time course 60hI-60hNI1.341390.037

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.106860.541
transgenic ySAMdc/azygous control (breaker)1.000781
transgenic ySAMdc/azygous control (red)1.450090.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.047930.13

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.791430.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.876651
Manapal/WT (break)0.948911
Manapal/WT (red)0.774390.181