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Expression of 1-1-1.3.16.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.170810.681
27DAP/17DAP1.236840.841
39DAP/27DAP0.89050.474
41DAP/39DAP1.161890.483
42DAP/41DAP1.357710.751
43DAP/42DAP0.92880.841
47DAP/43DAP0.907840.663
52DAP/47DAP1.409790.562
57DAP/52DAP0.823420.471

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.868270.04
17DAP/reference0.943610.065
27DAP/reference0.98290.61
39DAP/reference0.933110.083
41DAP/reference0.950510.341
42DAP/reference0.918230.021
43DAP/reference0.93980.346
47DAP/reference0.970530.191
52DAP/reference0.945620.3
57DAP/reference1.055510.101

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.981020.75
27DAP/17DAP1.059160.817
39DAP/27DAP1.131420.343
41DAP/39DAP1.016091
42DAP/41DAP1.097180.708
43DAP/42DAP1.06110.478
47DAP/43DAP1.012141
52DAP/47DAP1.014520.979
57DAP/52DAP0.992670.841
57DAP/7DAP1.473231

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.832050.077
17DAP/reference0.861210.02
27DAP/reference0.903410.015
39DAP/reference0.867870.016
41DAP/reference0.870150.026
42DAP/reference0.872290.01
43DAP/reference0.85380.025
47DAP/reference0.862970.222
52DAP/reference0.799190.027
57DAP/reference0.869290.008

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.041650.62
17DAP/reference1.060180.543
27DAP/reference0.82730.024
39DAP/reference0.803190.019
41DAP/reference0.832140.052
42DAP/reference0.845050.032
43DAP/reference1.084710.647
47DAP/reference0.916310.075
52DAP/reference0.84550.012
57DAP/reference1.007670.916

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.914370.127
17DAP/reference0.988290.751
27DAP/reference0.854690.085
39DAP/reference0.854580.022
41DAP/reference0.891510.019
42DAP/reference0.902580.059
43DAP/reference0.848010.023
47DAP/reference0.854830.114
52DAP/reference0.787120.061
57DAP/reference0.828630.039

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.11010.966
26DAP/20DAP0.895740.512
34DAP/26DAP1.137050.819
51DAP/34DAP0.796080.114
52DAP/51DAP0.866961
53DAP/52DAP1.107540.83
55DAP/53DAP1.130.861
57DAP/55DAP0.910050.479
62DAP/57DAP1.148020.833
68DAP/62DAP1.040791
68DAP/14DAP1.231960.295

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.716150.035

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.847710.458
Mature Green Tomato/Ripe Tomato0.974990.611
Immature Eggplant/Mature Eggplant1.560290.076
Ripe Pepper/Ripe Tomato0.797640.293
Mature Eggplant/Ripe Tomato1.456090.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.997481
1-1-2/M820.816850.958
12-2/M82N/AN/A
12-4/M820.922041
1-3/M821.027661
2-1-1/M820.91951N/A
2-1/M82N/AN/A
2-6/M821.015931
3-2/M820.92421
4-1-1/M820.849810.668
4-1/M820.787871
4-3-2/M820.74630.487
4-3/M82N/AN/A
5-3/M820.972361
6-2/M820.906190.481
6-3/M821.25337N/A
7-1/M82N/AN/A
7-2/M821.01081
9-3-2/M820.780.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.170880.46
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.984121
IL12-4/WTpooled1.055420.595
IL1-4/WTpooled0.96835N/A
WT/WTpooled1.001321

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.701190.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.973751
DC3000/delta hrp 6h1.129161
DC3000/delta hrp 12h1.081941
DC3000/delta hrp 24h0.892350.236

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.174381
DC3000 delta B/DC3000 delta AB1.008581

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.050611
Exp 36h0.650620.449
Exp 60h0.616830.257

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.988131
Var 0h0.994411
Var 12h I row2-row11.06750.613
Var 12h NI row2-row10.954120.906
Var 36h I row2-row10.72230.805
Var 36h NI row2-row10.818860.584
Var 60h I row2-row11.193380.562
Var 60h NI row2-row11.269520.904
Time course 0hI-0hNI1.058330.764
Time course 12hI-12hNI1.076480.475
Time course 36hI-36hNI0.816010.096
Time course 60hI-60hNI1.029040.575

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.024540.654
transgenic ySAMdc/azygous control (breaker)1.340730.172
transgenic ySAMdc/azygous control (red)1.085220.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.996030.737

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.246280.229

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.378980.096
Manapal/WT (break)1.136740.381
Manapal/WT (red)1.163640.164