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Expression of 1-1-1.3.3.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.379720.13
27DAP/17DAP1.224690.804
39DAP/27DAP1.175010.663
41DAP/39DAP0.977890.871
42DAP/41DAP1.057480.978
43DAP/42DAP0.847710.705
47DAP/43DAP0.805590.416
52DAP/47DAP0.924420.761
57DAP/52DAP1.070270.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.188660.089
17DAP/reference1.079040.016
27DAP/reference1.149970.15
39DAP/reference1.234520.019
41DAP/reference1.264390.032
42DAP/reference1.173130.001
43DAP/reference1.29134N/A
47DAP/reference1.001970.674
52DAP/reference1.176840.018
57DAP/reference0.903260.479

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.087610.858
27DAP/17DAP1.139390.859
39DAP/27DAP1.034160.718
41DAP/39DAP0.929140.875
42DAP/41DAP0.961310.721
43DAP/42DAP1.225290.273
47DAP/43DAP0.934770.677
52DAP/47DAP0.908990.719
57DAP/52DAP1.532670.911
57DAP/7DAP1.877511

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.970160.682
17DAP/reference1.024740.688
27DAP/reference1.180840.015
39DAP/reference1.008671
41DAP/reference0.98680.589
42DAP/reference1.122190.405
43DAP/reference1.004751
47DAP/reference1.156580.173
52DAP/reference1.06580.375
57DAP/reference1.147810.014

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.088790.642
17DAP/reference1.48950.008
27DAP/reference1.396040.016
39DAP/reference1.377410.011
41DAP/reference1.3640.015
42DAP/reference1.192950.144
43DAP/reference1.56390.009
47DAP/reference1.086890.4
52DAP/reference1.363550.006
57DAP/reference1.395950.012

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.980470.391
17DAP/reference1.06860.657
27DAP/reference1.014620.934
39DAP/reference1.030190.733
41DAP/reference1.212760.343
42DAP/reference1.22440.027
43DAP/reference1.188290.25
47DAP/reference1.201580.011
52DAP/reference1.224780.112
57DAP/reference1.47540.021

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.003461
26DAP/20DAP1.299950.85
34DAP/26DAP1.463180.542
51DAP/34DAP1.09160.925
52DAP/51DAP0.755111
53DAP/52DAP1.068730.819
55DAP/53DAP0.900320.515
57DAP/55DAP0.875730.527
62DAP/57DAP1.035270.935
68DAP/62DAP0.826980.579
68DAP/14DAP1.090880.211

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.136420.74

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.427360.068
Mature Green Tomato/Ripe Tomato0.900420.569
Immature Eggplant/Mature Eggplant0.923050.493
Ripe Pepper/Ripe Tomato0.918831
Mature Eggplant/Ripe Tomato0.957731

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.125740.877
1-1-2/M821.15531
12-2/M821.18621
12-4/M820.938381
1-3/M820.939180.501
2-1-1/M820.986861
2-1/M820.86434N/A
2-6/M821.089530.329
3-2/M821.32137N/A
4-1-1/M82N/AN/A
4-1/M821.04749N/A
4-3-2/M820.97244N/A
4-3/M821.28608N/A
5-3/M820.986651
6-2/M820.945431
6-3/M820.998811
7-1/M82N/AN/A
7-2/M821.027661
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled1.01546N/A
IL1-4/WTpooledN/AN/A
WT/WTpooled0.4663N/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.639160.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.042770.921
DC3000/delta hrp 6h0.97490.95
DC3000/delta hrp 12h1.033111
DC3000/delta hrp 24h1.047730.655

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.5524N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.078621
Exp 36hN/AN/A
Exp 60h1.067921

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.558811
Var 0h0.99116N/A
Var 12h I row2-row10.88277N/A
Var 12h NI row2-row11.08856N/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row10.933420.478
Var 60h I row2-row11.197330.347
Var 60h NI row2-row10.654010.866
Time course 0hI-0hNI1.089450.852
Time course 12hI-12hNI0.88410.149
Time course 36hI-36hNI1.024081
Time course 60hI-60hNI0.604360.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.858860.324
transgenic ySAMdc/azygous control (breaker)0.790450.134
transgenic ySAMdc/azygous control (red)1.034271

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.009650.619

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.800550.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.57710.172
Manapal/WT (break)0.751120.299
Manapal/WT (red)1.008331