Expression of 1-1-1.3.4.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.63712 | 0.052 |
27DAP/17DAP | 2.05154 | 0.402 |
39DAP/27DAP | 0.76409 | 0.399 |
41DAP/39DAP | 1.17221 | 0.859 |
42DAP/41DAP | 0.90448 | 1 |
43DAP/42DAP | 0.8896 | 0.829 |
47DAP/43DAP | 0.76134 | 0.33 |
52DAP/47DAP | 2.37195 | 0.126 |
57DAP/52DAP | 0.53815 | 0.47 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.35158 | 0.013 |
17DAP/reference | 1.29296 | 0.013 |
27DAP/reference | 1.1772 | 0.024 |
39DAP/reference | 0.84578 | 0.056 |
41DAP/reference | 0.88309 | 0.154 |
42DAP/reference | 0.89748 | 0.025 |
43DAP/reference | 1.0956 | 0.445 |
47DAP/reference | 0.62722 | 0.001 |
52DAP/reference | 0.65559 | 0.013 |
57DAP/reference | 0.68897 | 0.01 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.1497 | 0.87 |
27DAP/17DAP | 0.9149 | 0.684 |
39DAP/27DAP | 1.01082 | 1 |
41DAP/39DAP | 1.25437 | 0.417 |
42DAP/41DAP | 0.92467 | 0.524 |
43DAP/42DAP | 1.27869 | 0.112 |
47DAP/43DAP | 1.16171 | 0.593 |
52DAP/47DAP | 1.14797 | 0.718 |
57DAP/52DAP | 1.3647 | 0.11 |
57DAP/7DAP | 1.86278 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98019 | 0.55 |
17DAP/reference | 0.91214 | 0.108 |
27DAP/reference | 0.73442 | 0.01 |
39DAP/reference | 0.77373 | 0.011 |
41DAP/reference | 0.65218 | 0.017 |
42DAP/reference | 0.67492 | 0.011 |
43DAP/reference | 0.78624 | 0.017 |
47DAP/reference | 0.6962 | 0.128 |
52DAP/reference | 0.79669 | 0.053 |
57DAP/reference | 0.68386 | 0.009 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8582 | 0.204 |
17DAP/reference | 0.96285 | 0.561 |
27DAP/reference | 1.12674 | 0.875 |
39DAP/reference | 1.12522 | 0.182 |
41DAP/reference | 1.02373 | 1 |
42DAP/reference | 0.92985 | 0.135 |
43DAP/reference | 0.97193 | 0.646 |
47DAP/reference | 0.95016 | 0.319 |
52DAP/reference | 0.72082 | 0.006 |
57DAP/reference | 0.91168 | 0.384 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.62383 | 0.112 |
17DAP/reference | 1.00905 | 1 |
27DAP/reference | 0.99686 | 0.805 |
39DAP/reference | 0.81001 | 0.025 |
41DAP/reference | 0.80577 | 0.07 |
42DAP/reference | 2.18379 | 0.053 |
43DAP/reference | 2.06143 | 0.205 |
47DAP/reference | 0.64757 | 0.008 |
52DAP/reference | 1.4402 | 0.534 |
57DAP/reference | 1.08117 | 0.954 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.06207 | 0.966 |
26DAP/20DAP | 1.10508 | 0.635 |
34DAP/26DAP | 0.96243 | 0.927 |
51DAP/34DAP | 1.17749 | 0.637 |
52DAP/51DAP | 1.23051 | 0.42 |
53DAP/52DAP | 1.12885 | 0.806 |
55DAP/53DAP | 1.05371 | 0.964 |
57DAP/55DAP | 1.00895 | 0.944 |
62DAP/57DAP | 1.22955 | 0.767 |
68DAP/62DAP | 0.71012 | 0.118 |
68DAP/14DAP | 0.64595 | 0.09 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.41874 | 0.246 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.26168 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.68627 | 1 |
Immature Eggplant/Mature Eggplant | 0.4413 | 0.082 |
Ripe Pepper/Ripe Tomato | 0.62576 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.46996 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.11508 | 0.591 |
1-1-2/M82 | 0.94106 | 1 |
12-2/M82 | 1.68843 | 0.421 |
12-4/M82 | 1.21948 | 1 |
1-3/M82 | 0.9682 | 1 |
2-1-1/M82 | 0.93562 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.15383 | 0.452 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.02524 | 1 |
4-1/M82 | 1.20605 | |
4-3-2/M82 | 1.08289 | 1 |
4-3/M82 | 2.33339 | |
5-3/M82 | 0.68898 | 0.49 |
6-2/M82 | 0.91796 | 1 |
6-3/M82 | 0.89516 | 1 |
7-1/M82 | 0.64583 | |
7-2/M82 | 1.1381 | 1 |
9-3-2/M82 | 1.17849 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.90599 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 1.27142 | |
IL1-4/WTpooled | 0.79152 | 0.834 |
WT/WTpooled | 1.05756 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.02934 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96103 | |
DC3000/delta hrp 6h | 1.17793 | 1 |
DC3000/delta hrp 12h | 1.05341 | 1 |
DC3000/delta hrp 24h | 0.98052 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 118.346 | 0.333 |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.98065 | 1 |
Exp 36h | 1.00584 | 1 |
Exp 60h | 0.71841 | 0.522 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.8312 | 0.289 |
transgenic ySAMdc/azygous control (breaker) | 0.79257 | 0.251 |
transgenic ySAMdc/azygous control (red) | 1.34216 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.92784 | 0.054 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.66573 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.98502 | 1 |
Manapal/WT (break) | 0.98029 | 1 |
Manapal/WT (red) | 0.94042 | 0.607 |
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