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Expression of 1-1-1.4.1.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.911190.405
27DAP/17DAP0.880470.697
39DAP/27DAP0.900130.529
41DAP/39DAP1.003730.929
42DAP/41DAP1.032671
43DAP/42DAP0.856960.497
47DAP/43DAP0.920860.71
52DAP/47DAP1.772860.256
57DAP/52DAP1.035710.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.086230.081
17DAP/reference1.006990.813
27DAP/reference0.963440.187
39DAP/reference1.020740.497
41DAP/reference0.970510.434
42DAP/reference1.005721
43DAP/reference1.04890.306
47DAP/reference0.987410.503
52DAP/reference1.03430.388
57DAP/reference1.117620.03

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.025660.736
27DAP/17DAP0.993910.943
39DAP/27DAP0.961780.579
41DAP/39DAP1.08810.347
42DAP/41DAP0.96750.662
43DAP/42DAP0.970390.538
47DAP/43DAP1.015090.901
52DAP/47DAP1.034690.856
57DAP/52DAP1.026080.885
57DAP/7DAP0.988371

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.091470.344
17DAP/reference1.020080.525
27DAP/reference1.065730.009
39DAP/reference1.030140.237
41DAP/reference1.004510.977
42DAP/reference1.067120.308
43DAP/reference1.038160.14
47DAP/reference1.084410.304
52DAP/reference1.104620.024
57DAP/reference1.054440.331

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.1050.16
17DAP/reference1.077180.257
27DAP/reference1.051520.583
39DAP/reference1.059550.424
41DAP/reference1.066770.327
42DAP/reference1.031880.759
43DAP/reference1.014610.919
47DAP/reference1.018290.775
52DAP/reference1.001681
57DAP/reference1.020340.581

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.052410.28
17DAP/reference1.013280.876
27DAP/reference1.041740.408
39DAP/reference1.00561
41DAP/reference0.958090.209
42DAP/reference1.071770.356
43DAP/reference1.042760.555
47DAP/reference0.992040.626
52DAP/reference1.007250.99
57DAP/reference1.008361

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.052550.945
26DAP/20DAP0.9570.512
34DAP/26DAP0.97350.927
51DAP/34DAP1.065650.483
52DAP/51DAP1.009670.86
53DAP/52DAP0.982580.951
55DAP/53DAP1.01150.989
57DAP/55DAP0.964910.839
62DAP/57DAP0.979850.994
68DAP/62DAP1.028040.885
68DAP/14DAP1.046660.714

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.009490.954

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.984370.826
Mature Green Tomato/Ripe Tomato0.968570.66
Immature Eggplant/Mature Eggplant1.227660.074
Ripe Pepper/Ripe Tomato0.753470.293
Mature Eggplant/Ripe Tomato1.324970.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.059140.742
1-1-2/M820.92281
12-2/M820.955680.955
12-4/M820.941860.298
1-3/M821.155760.479
2-1-1/M821.011171
2-1/M820.981561
2-6/M820.943991
3-2/M821.038690.426
4-1-1/M821.020041
4-1/M820.841230.665
4-3-2/M820.922520.698
4-3/M820.928190.72
5-3/M821.050170.572
6-2/M821.013261
6-3/M820.971091
7-1/M820.943490.803
7-2/M820.968820.881
9-3-2/M820.947461

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.07880.365
IL2-6/WTpooled0.820880.473
IL7-5/WTpooled1.371990.792
IL7-3/WTpooled0.974821
IL12-4/WTpooled1.134140.673
IL1-4/WTpooled1.162210.426
WT/WTpooled1.051671

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.088831

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.931680.941
DC3000/delta hrp 6h1.007611
DC3000/delta hrp 12h0.907131
DC3000/delta hrp 24h0.992831

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.135190.043
DC3000 delta B/DC3000 delta AB1.120540.298

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.912761
Exp 36h1.095211
Exp 60h1.05131

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.012711
Var 0h1.834660.421
Var 12h I row2-row11.149910.473
Var 12h NI row2-row11.031381
Var 36h I row2-row11.01161
Var 36h NI row2-row10.835980.61
Var 60h I row2-row11.111550.562
Var 60h NI row2-row11.045151
Time course 0hI-0hNI0.963630.812
Time course 12hI-12hNI1.024110.785
Time course 36hI-36hNI1.19310.035
Time course 60hI-60hNI2.099410.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.005161
transgenic ySAMdc/azygous control (breaker)1.475140.178
transgenic ySAMdc/azygous control (red)1.237140.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.024010.204

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.788620.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.877970.172
Manapal/WT (break)0.999311
Manapal/WT (red)1.120421