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Expression of 1-1-1.4.1.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.927130.617
27DAP/17DAP1.41030.683
39DAP/27DAP1.209370.44
41DAP/39DAP1.074440.78
42DAP/41DAP0.921411
43DAP/42DAP1.078541
47DAP/43DAP1.543760.269
52DAP/47DAP1.022790.993
57DAP/52DAP0.913680.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.030990.611
17DAP/reference1.04650.172
27DAP/reference0.968220.417
39DAP/reference1.033020.486
41DAP/reference1.075830.145
42DAP/reference0.984550.384
43DAP/reference1.020010.812
47DAP/reference0.982660.473
52DAP/reference1.019610.633
57DAP/reference0.966950.106

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.174860.247
27DAP/17DAP0.998020.969
39DAP/27DAP0.918290.607
41DAP/39DAP1.14720.579
42DAP/41DAP0.845320.071
43DAP/42DAP0.966970.709
47DAP/43DAP0.977640.857
52DAP/47DAP0.852430.372
57DAP/52DAP1.345630.171
57DAP/7DAP1.191

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.328180.083
17DAP/reference1.529380.022
27DAP/reference1.434560.107
39DAP/reference1.444520.024
41DAP/reference1.458360.017
42DAP/reference1.384380.024
43DAP/reference1.814490.009
47DAP/reference1.196170.353
52DAP/reference1.395390.011
57DAP/reference1.314610.214

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.162310.35
17DAP/reference1.155740.147
27DAP/reference1.13570.283
39DAP/reference1.18990.225
41DAP/reference1.055250.925
42DAP/reference0.971780.433
43DAP/reference1.017870.986
47DAP/reference1.000130.749
52DAP/reference1.188920.194
57DAP/reference1.119550.374

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.106570.481
17DAP/reference1.477740.076
27DAP/reference1.433340.033
39DAP/reference1.545090.104
41DAP/reference1.293740.08
42DAP/reference1.050250.802
43DAP/reference1.050440.71
47DAP/reference1.116560.089
52DAP/reference1.166480.517
57DAP/reference1.109730.153

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.290720.678
26DAP/20DAP1.299290.499
34DAP/26DAP0.925750.826
51DAP/34DAP1.23220.73
52DAP/51DAP0.855921
53DAP/52DAP1.097620.768
55DAP/53DAP0.97310.784
57DAP/55DAP1.061670.881
62DAP/57DAP0.965560.871
68DAP/62DAP0.776890.29
68DAP/14DAP0.980831

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.669710.083

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.981330.863
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant1.008871
Ripe Pepper/Ripe Tomato0.699680.224
Mature Eggplant/Ripe Tomato1.101861

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.99771
12-2/M820.991191
12-4/M820.803660.319
1-3/M82N/AN/A
2-1-1/M820.73503N/A
2-1/M820.99251N/A
2-6/M821.036531
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M820.753910.611
5-3/M821.149970.378
6-2/M820.57261N/A
6-3/M820.95747N/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.745930.243
IL2-6/WTpooled0.78008N/A
IL7-5/WTpooled1.665081
IL7-3/WTpooled1.008661
IL12-4/WTpooled0.723440.539
IL1-4/WTpooled1.241261
WT/WTpooled1.031881

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.177690.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.175380.323
DC3000/delta hrp 6h0.941670.95
DC3000/delta hrp 12h1.060451
DC3000/delta hrp 24h1.0320.84

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.826840.085
DC3000 delta B/DC3000 delta AB1.076470.646

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.772081
Exp 36h0.886030.699
Exp 60h0.983750.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.0621N/A
Var 0h1.707620.936
Var 12h I row2-row10.896440.627
Var 12h NI row2-row11.227840.34
Var 36h I row2-row11.519730.601
Var 36h NI row2-row11.061081
Var 60h I row2-row10.969010.952
Var 60h NI row2-row10.87121
Time course 0hI-0hNI0.902780.522
Time course 12hI-12hNI0.955190.568
Time course 36hI-36hNI1.389040.056
Time course 60hI-60hNI0.752870.026

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.937280.454
transgenic ySAMdc/azygous control (breaker)1.366080.248
transgenic ySAMdc/azygous control (red)1.110780.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.050490.061

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.054981

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.201821
Manapal/WT (break)1.299970.14
Manapal/WT (red)0.942050.607