Tomato Functional Genomics Database (TFGD)

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Expression of 1-1-1.4.1.5

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.42321	0.365
27DAP/17DAP	3.40138	0.402
39DAP/27DAP	0.80656	0.458
41DAP/39DAP	1.7602	0.742
42DAP/41DAP	0.88404	1
43DAP/42DAP	1.36976	0.512
47DAP/43DAP	0.98315	0.859
52DAP/47DAP	1.0107	0.971
57DAP/52DAP	1.08421	0.983

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	N/A	N/A
17DAP/reference	0.78146	N/A
27DAP/reference	N/A	N/A
39DAP/reference	0.79428	0.424
41DAP/reference	0.43987	0.009
42DAP/reference	0.4845	N/A
43DAP/reference	1.06239	1
47DAP/reference	0.68314	N/A
52DAP/reference	2.13413	0.007
57DAP/reference	0.56276	N/A

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.20831	0.719
27DAP/17DAP	1.14873	0.632
39DAP/27DAP	1.08353	1
41DAP/39DAP	1.01177	1
42DAP/41DAP	1.59256	0.514
43DAP/42DAP	0.81408	N/A
47DAP/43DAP	0.97056	0.833
52DAP/47DAP	0.8359	0.572
57DAP/52DAP	1.14715	N/A
57DAP/7DAP	N/A	N/A

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.47717	0.038
17DAP/reference	1.80456	0.011
27DAP/reference	1.1564	0.246
39DAP/reference	1.19018	0.267
41DAP/reference	0.94159	0.259
42DAP/reference	1.12453	0.405
43DAP/reference	1.43796	0.007
47DAP/reference	1.03311	1
52DAP/reference	1.25572	0.286
57DAP/reference	1.3731	0.007

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	N/A	N/A
17DAP/reference	3.39182	N/A
27DAP/reference	0.43437	0.024
39DAP/reference	0.88141	N/A
41DAP/reference	1.85875	N/A
42DAP/reference	N/A	N/A
43DAP/reference	0.58415	0.039
47DAP/reference	N/A	N/A
52DAP/reference	2.10107	0.838
57DAP/reference	2.80214	0.705

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.36643	0.029
17DAP/reference	1.20035	0.321
27DAP/reference	1.43552	0.045
39DAP/reference	1.40515	0.052
41DAP/reference	1.125	0.257
42DAP/reference	0.90779	0.445
43DAP/reference	1.06026	0.7
47DAP/reference	0.11211	N/A
52DAP/reference	1.23307	0.205
57DAP/reference	1.20841	N/A

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.6571	N/A
26DAP/20DAP	N/A	N/A
34DAP/26DAP	0.66228	0.322
51DAP/34DAP	N/A	N/A
52DAP/51DAP	1.80891	0.044
53DAP/52DAP	1.31361	0.83
55DAP/53DAP	0.78794	0.604
57DAP/55DAP	0.99229	0.855
62DAP/57DAP	1.6113	N/A
68DAP/62DAP	1.16177	N/A
68DAP/14DAP	1.35592	0.615

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.58655	0.014

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.01842	N/A
IL2-6/WTpooled	1.22716	0.531
IL7-5/WTpooled	0.92727	1
IL7-3/WTpooled	0.81465	1
IL12-4/WTpooled	0.89151	0.71
IL1-4/WTpooled	0.93352	0.834
WT/WTpooled	0.94685	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	3.97241	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A