Expression of 1-1-1.4.11.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 22.6898 | 0.011 |
27DAP/17DAP | 1.41349 | 0.62 |
39DAP/27DAP | 1.36234 | 0.165 |
41DAP/39DAP | 0.54149 | 0.045 |
42DAP/41DAP | 0.70859 | 0.774 |
43DAP/42DAP | 1.06757 | 0.937 |
47DAP/43DAP | 0.4995 | 0.053 |
52DAP/47DAP | 0.54188 | 0.057 |
57DAP/52DAP | 1.12187 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98113 | 0.293 |
17DAP/reference | 4.32327 | 0.011 |
27DAP/reference | 8.64315 | 0.007 |
39DAP/reference | 6.54943 | 0.01 |
41DAP/reference | 5.89744 | 0.009 |
42DAP/reference | 3.40884 | 0.001 |
43DAP/reference | 1.11083 | 0.325 |
47DAP/reference | 1.10814 | 0.391 |
52DAP/reference | 0.65037 | 0.015 |
57DAP/reference | 0.67597 | 0.018 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 2.95254 | 0.036 |
27DAP/17DAP | 1.68392 | 0.084 |
39DAP/27DAP | 0.80768 | 0.159 |
41DAP/39DAP | 1.41084 | 0.817 |
42DAP/41DAP | 0.94454 | 0.552 |
43DAP/42DAP | 0.59189 | 0.024 |
47DAP/43DAP | 0.74408 | 0.037 |
52DAP/47DAP | 1.34554 | 0.237 |
57DAP/52DAP | 0.48474 | 0.049 |
57DAP/7DAP | 1.41092 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.91941 | 0.298 |
17DAP/reference | 2.99404 | 0.006 |
27DAP/reference | 4.17899 | 0.006 |
39DAP/reference | 2.71065 | 0.01 |
41DAP/reference | 5.13456 | 0.008 |
42DAP/reference | 2.4473 | 0.03 |
43DAP/reference | 1.02153 | 0.608 |
47DAP/reference | 1.35691 | 0.071 |
52DAP/reference | 1.44663 | 0.025 |
57DAP/reference | 1.37602 | 0.117 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.25925 | 0.005 |
17DAP/reference | 3.88 | 0.007 |
27DAP/reference | 5.95272 | 0.014 |
39DAP/reference | 6.28229 | 0.011 |
41DAP/reference | 6.6459 | 0.003 |
42DAP/reference | 6.91087 | 0.007 |
43DAP/reference | 2.62084 | 0.07 |
47DAP/reference | 3.21843 | 0.008 |
52DAP/reference | 5.75965 | 0.004 |
57DAP/reference | 1.45355 | 0.214 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.46979 | 0.05 |
17DAP/reference | 1.4506 | 0.112 |
27DAP/reference | 2.65058 | 0.013 |
39DAP/reference | 2.78454 | 0.004 |
41DAP/reference | 1.11567 | 0.674 |
42DAP/reference | 0.61554 | 0.036 |
43DAP/reference | 0.50857 | 0.023 |
47DAP/reference | 0.30022 | 0.004 |
52DAP/reference | 0.26922 | 0.032 |
57DAP/reference | 0.36947 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.30718 | 0.966 |
26DAP/20DAP | 1.31781 | 0.931 |
34DAP/26DAP | 1.71502 | 1 |
51DAP/34DAP | 0.91211 | 0.579 |
52DAP/51DAP | 0.67547 | 1 |
53DAP/52DAP | 0.77662 | 0.259 |
55DAP/53DAP | 0.74234 | 0.072 |
57DAP/55DAP | 0.93192 | 0.475 |
62DAP/57DAP | 1.16692 | 0.622 |
68DAP/62DAP | 0.87118 | 0.579 |
68DAP/14DAP | 1.10716 | 0.656 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 9.67072 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.58694 | 0.127 |
Mature Green Tomato/Ripe Tomato | 6.99291 | 0.015 |
Immature Eggplant/Mature Eggplant | 0.26963 | |
Ripe Pepper/Ripe Tomato | 1.18038 | 1 |
Mature Eggplant/Ripe Tomato | 0.02679 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.80808 | 0.883 |
1-1-2/M82 | 1.28139 | 1 |
12-2/M82 | 0.5746 | |
12-4/M82 | 2.33868 | 0.694 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.72238 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.06151 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 4.26535 | |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.9564 | |
4-3/M82 | 2.34739 | 0.268 |
5-3/M82 | 2.30857 | 0.572 |
6-2/M82 | 0.63163 | 0.481 |
6-3/M82 | 1.85822 | |
7-1/M82 | 2.90741 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.56604 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.51342 | 0.395 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.36874 | 1 |
IL12-4/WTpooled | 1.34818 | 0.42 |
IL1-4/WTpooled | 1.1132 | |
WT/WTpooled | 0.96709 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.76498 | 0.309 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02594 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.02933 | 1 |
DC3000/delta hrp 24h | 0.95804 | 0.736 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.70116 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04734 | 1 |
Var 0h | 1.02977 | 1 |
Var 12h I row2-row1 | 1.25033 | 0.211 |
Var 12h NI row2-row1 | 0.70179 | 0.281 |
Var 36h I row2-row1 | 0.92156 | 1 |
Var 36h NI row2-row1 | 0.68063 | 0.61 |
Var 60h I row2-row1 | 0.9432 | 0.306 |
Var 60h NI row2-row1 | 1.16035 | 1 |
Time course 0hI-0hNI | 1.32222 | 0.764 |
Time course 12hI-12hNI | 1.71216 | 0.006 |
Time course 36hI-36hNI | 2.40427 | 0.006 |
Time course 60hI-60hNI | 4.23946 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.02068 | 0.921 |
transgenic ySAMdc/azygous control (breaker) | 0.95095 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.67193 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98676 | 0.651 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.74589 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.88536 | 1 |
Manapal/WT (break) | 0.54557 | 0.333 |
Manapal/WT (red) | 3.71347 | 0.164 |
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