Expression of 1-1-1.4.11.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP22.68980.011
27DAP/17DAP1.413490.62
39DAP/27DAP1.362340.165
41DAP/39DAP0.541490.045
42DAP/41DAP0.708590.774
43DAP/42DAP1.067570.937
47DAP/43DAP0.49950.053
52DAP/47DAP0.541880.057
57DAP/52DAP1.121871

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.981130.293
17DAP/reference4.323270.011
27DAP/reference8.643150.007
39DAP/reference6.549430.01
41DAP/reference5.897440.009
42DAP/reference3.408840.001
43DAP/reference1.110830.325
47DAP/reference1.108140.391
52DAP/reference0.650370.015
57DAP/reference0.675970.018

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.952540.036
27DAP/17DAP1.683920.084
39DAP/27DAP0.807680.159
41DAP/39DAP1.410840.817
42DAP/41DAP0.944540.552
43DAP/42DAP0.591890.024
47DAP/43DAP0.744080.037
52DAP/47DAP1.345540.237
57DAP/52DAP0.484740.049
57DAP/7DAP1.410921

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.919410.298
17DAP/reference2.994040.006
27DAP/reference4.178990.006
39DAP/reference2.710650.01
41DAP/reference5.134560.008
42DAP/reference2.44730.03
43DAP/reference1.021530.608
47DAP/reference1.356910.071
52DAP/reference1.446630.025
57DAP/reference1.376020.117

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.259250.005
17DAP/reference3.880.007
27DAP/reference5.952720.014
39DAP/reference6.282290.011
41DAP/reference6.64590.003
42DAP/reference6.910870.007
43DAP/reference2.620840.07
47DAP/reference3.218430.008
52DAP/reference5.759650.004
57DAP/reference1.453550.214

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.469790.05
17DAP/reference1.45060.112
27DAP/reference2.650580.013
39DAP/reference2.784540.004
41DAP/reference1.115670.674
42DAP/reference0.615540.036
43DAP/reference0.508570.023
47DAP/reference0.300220.004
52DAP/reference0.269220.032
57DAP/reference0.369470.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.307180.966
26DAP/20DAP1.317810.931
34DAP/26DAP1.715021
51DAP/34DAP0.912110.579
52DAP/51DAP0.675471
53DAP/52DAP0.776620.259
55DAP/53DAP0.742340.072
57DAP/55DAP0.931920.475
62DAP/57DAP1.166920.622
68DAP/62DAP0.871180.579
68DAP/14DAP1.107160.656

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker9.670720.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.586940.127
Mature Green Tomato/Ripe Tomato6.992910.015
Immature Eggplant/Mature Eggplant0.26963
Ripe Pepper/Ripe Tomato1.180381
Mature Eggplant/Ripe Tomato0.026790.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.808080.883
1-1-2/M821.281391
12-2/M820.5746
12-4/M822.338680.694
1-3/M82N/AN/A
2-1-1/M820.72238
2-1/M82N/AN/A
2-6/M821.061511
3-2/M82N/AN/A
4-1-1/M824.26535
4-1/M82N/AN/A
4-3-2/M821.9564
4-3/M822.347390.268
5-3/M822.308570.572
6-2/M820.631630.481
6-3/M821.85822
7-1/M822.90741
7-2/M82N/AN/A
9-3-2/M820.56604

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.513420.395
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.368741
IL12-4/WTpooled1.348180.42
IL1-4/WTpooled1.1132
WT/WTpooled0.967091

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.764980.309

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.025941
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.029331
DC3000/delta hrp 24h0.958040.736

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.701161
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.047341
Var 0h1.029771
Var 12h I row2-row11.250330.211
Var 12h NI row2-row10.701790.281
Var 36h I row2-row10.921561
Var 36h NI row2-row10.680630.61
Var 60h I row2-row10.94320.306
Var 60h NI row2-row11.160351
Time course 0hI-0hNI1.322220.764
Time course 12hI-12hNI1.712160.006
Time course 36hI-36hNI2.404270.006
Time course 60hI-60hNI4.239460.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.020680.921
transgenic ySAMdc/azygous control (breaker)0.950950.49
transgenic ySAMdc/azygous control (red)0.671931

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.986760.651

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.745890.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.885361
Manapal/WT (break)0.545570.333
Manapal/WT (red)3.713470.164