Tomato Functional Genomics Database (TFGD)

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Expression of 1-1-1.4.14.9

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.22699	0.947
27DAP/17DAP	3.26884	0.184
39DAP/27DAP	1.05394	0.82
41DAP/39DAP	0.69245	0.245
42DAP/41DAP	1.11566	0.978
43DAP/42DAP	1.16058	1
47DAP/43DAP	1.17731	0.842
52DAP/47DAP	1.14587	0.869
57DAP/52DAP	1.23667	0.996

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.32524	N/A
17DAP/reference	0.5547	N/A
27DAP/reference	0.46234	N/A
39DAP/reference	0.72901	N/A
41DAP/reference	1.3301	0.043
42DAP/reference	1.0641	0.755
43DAP/reference	1.86955	N/A
47DAP/reference	1.87723	0.404
52DAP/reference	0.83071	N/A
57DAP/reference	N/A	N/A

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.95644	0.719
27DAP/17DAP	0.80364	0.724
39DAP/27DAP	1.08837	1
41DAP/39DAP	0.62833	0.186
42DAP/41DAP	1.19419	0.487
43DAP/42DAP	1.04286	0.83
47DAP/43DAP	1.43417	0.973
52DAP/47DAP	0.85137	0.575
57DAP/52DAP	1.50752	0.044
57DAP/7DAP	N/A	N/A

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.97884	0.55
17DAP/reference	0.96485	0.389
27DAP/reference	1.10649	0.16
39DAP/reference	1.04398	0.57
41DAP/reference	1.07057	0.524
42DAP/reference	1.0393	0.889
43DAP/reference	1.01005	0.764
47DAP/reference	0.80673	0.079
52DAP/reference	1.05738	0.599
57DAP/reference	1.15103	0.094

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.87016	0.688
17DAP/reference	1.59258	N/A
27DAP/reference	1.00411	1
39DAP/reference	0.63738	N/A
41DAP/reference	0.39716	N/A
42DAP/reference	0.84674	0.482
43DAP/reference	1.29655	0.179
47DAP/reference	0.76658	N/A
52DAP/reference	0.47134	0.093
57DAP/reference	1.13706	N/A

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.00348	0.699
17DAP/reference	1.02489	1
27DAP/reference	0.97502	0.566
39DAP/reference	0.93499	0.029
41DAP/reference	1.5283	0.537
42DAP/reference	0.93821	0.445
43DAP/reference	0.90802	0.267
47DAP/reference	N/A	N/A
52DAP/reference	0.95694	0.623
57DAP/reference	1.26614	N/A

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.92451	1
26DAP/20DAP	N/A	N/A
34DAP/26DAP	1.04951	0.954
51DAP/34DAP	1.29445	0.034
52DAP/51DAP	0.97849	1
53DAP/52DAP	0.89153	0.621
55DAP/53DAP	1.1605	0.848
57DAP/55DAP	1.72326	0.906
62DAP/57DAP	0.72362	0.871
68DAP/62DAP	0.7188	0.177
68DAP/14DAP	0.98512	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	N/A	N/A

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	1.11792	0.814
Immature Eggplant/Mature Eggplant	0.98845	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.7709	0.243
IL2-6/WTpooled	1.10863	N/A
IL7-5/WTpooled	1.44746	1
IL7-3/WTpooled	1.44313	N/A
IL12-4/WTpooled	1.15987	0.839
IL1-4/WTpooled	1.23103	N/A
WT/WTpooled	1.02985	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	30.8806	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	1.64049	1
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	0.92868	1
Var 12h I row2-row1	0.64997	0.338
Var 12h NI row2-row1	0.69943	0.627
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	1.09262	1
Var 60h I row2-row1	1.09269	1
Var 60h NI row2-row1	1.91888	0.904
Time course 0hI-0hNI	0.82505	N/A
Time course 12hI-12hNI	0.81773	N/A
Time course 36hI-36hNI	3.39666	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	1.60935	1
Manapal/WT (red)	N/A	N/A