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Expression of 1-1-1.4.19.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.022850.997
27DAP/17DAP1.325240.699
39DAP/27DAP1.094150.8
41DAP/39DAP1.179070.56
42DAP/41DAP1.467230.619
43DAP/42DAP0.978880.925
47DAP/43DAP0.969090.876
52DAP/47DAP1.062820.913
57DAP/52DAP1.015091

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.42590.016
17DAP/reference1.363720.012
27DAP/reference1.191320.599
39DAP/reference1.5130.01
41DAP/reference1.115370.667
42DAP/reference1.214360.276
43DAP/reference1.37432N/A
47DAP/reference1.318240.685
52DAP/reference1.023630.636
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.019540.858
27DAP/17DAP1.015840.957
39DAP/27DAP1.067750.505
41DAP/39DAP0.976750.959
42DAP/41DAP1.03190.727
43DAP/42DAP0.99160.928
47DAP/43DAP0.985330.923
52DAP/47DAP1.032240.862
57DAP/52DAP1.019650.957
57DAP/7DAP1.127481

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.864580.058
17DAP/reference0.960930.22
27DAP/reference0.924140.014
39DAP/reference0.975070.17
41DAP/reference0.959350.247
42DAP/reference1.020650.889
43DAP/reference0.99510.608
47DAP/reference1.074440.504
52DAP/reference0.908880.09
57DAP/reference0.956560.074

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.0780.597
17DAP/reference1.213260.143
27DAP/reference1.176580.38
39DAP/reference1.126220.412
41DAP/reference1.101840.587
42DAP/reference1.426770.012
43DAP/reference1.278340.038
47DAP/reference1.268470.03
52DAP/reference1.263760.017
57DAP/reference1.383070.019

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.910410.03
17DAP/reference1.107610.563
27DAP/reference1.024360.871
39DAP/reference1.025360.858
41DAP/reference0.973770.459
42DAP/reference1.025970.692
43DAP/reference1.152970.291
47DAP/reference1.299960.053
52DAP/reference0.985150.763
57DAP/reference0.849390.083

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.036941
26DAP/20DAP0.916290.512
34DAP/26DAP0.96270.909
51DAP/34DAP0.982650.824
52DAP/51DAP0.972461
53DAP/52DAP1.070670.662
55DAP/53DAP1.08680.429
57DAP/55DAP1.051180.915
62DAP/57DAP1.138810.8
68DAP/62DAP0.744490.314
68DAP/14DAP0.680790.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.093450.028

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.038990.948
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.06660.224
Mature Eggplant/Ripe Tomato0.113320.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.061060.877
1-1-2/M821.003231
12-2/M821.013361
12-4/M821.042361
1-3/M820.968471
2-1-1/M821.161390.764
2-1/M821.0281N/A
2-6/M820.991641
3-2/M821.285670.549
4-1-1/M821.049481
4-1/M821.432910.853
4-3-2/M820.894760.487
4-3/M821.131351
5-3/M820.93241
6-2/M820.947131
6-3/M820.987371
7-1/M821.01939N/A
7-2/M821.092410.385
9-3-2/M820.961671

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.702170.277
IL2-6/WTpooled0.689550.348
IL7-5/WTpooled0.892641
IL7-3/WTpooled1.308420.362
IL12-4/WTpooled1.2090.432
IL1-4/WTpooled1.260591
WT/WTpooled1.019891

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.766550.209

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.961081
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.123711
DC3000/delta hrp 24h1.077920.535

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.105310.102
DC3000 delta B/DC3000 delta AB1.11280.353

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h1.115710.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.000561
Var 0hN/AN/A
Var 12h I row2-row11.11440.348
Var 12h NI row2-row10.990231
Var 36h I row2-row10.92181
Var 36h NI row2-row11.052291
Var 60h I row2-row11.406881
Var 60h NI row2-row11.199130.904
Time course 0hI-0hNI1.066850.852
Time course 12hI-12hNI1.039430.81
Time course 36hI-36hNI1.002740.89
Time course 60hI-60hNI1.169650.037

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.923050.454
transgenic ySAMdc/azygous control (breaker)0.836650.49
transgenic ySAMdc/azygous control (red)0.928881

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.926040.214

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.003491

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.075491