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Expression of 1-1-1.4.4.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.793250.232
27DAP/17DAP1.440760.681
39DAP/27DAP1.481430.092
41DAP/39DAP0.818350.302
42DAP/41DAP1.033681
43DAP/42DAP1.033070.937
47DAP/43DAP1.30140.633
52DAP/47DAP1.10030.879
57DAP/52DAP1.237130.902

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.948590.371
17DAP/reference0.841370.085
27DAP/reference1.161220.539
39DAP/reference0.998031
41DAP/reference0.714530.085
42DAP/reference1.094050.2
43DAP/reference1.173160.812
47DAP/reference1.08940.575
52DAP/reference1.328880.088
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.356250.129
27DAP/17DAP0.82590.446
39DAP/27DAP0.976410.87
41DAP/39DAP1.021011
42DAP/41DAP0.833370.034
43DAP/42DAP1.085090.351
47DAP/43DAP0.985160.928
52DAP/47DAP1.077010.73
57DAP/52DAP1.067040.911
57DAP/7DAP0.944881

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.93630.024
17DAP/reference1.382910.007
27DAP/reference1.248130.023
39DAP/reference1.915110.006
41DAP/reference1.864560.041
42DAP/reference1.415840.03
43DAP/reference1.607480.009
47DAP/reference2.285990.022
52DAP/reference1.567180.013
57DAP/reference2.033350.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.008790.77
17DAP/reference1.015681
27DAP/reference1.201770.446
39DAP/reference1.193110.477
41DAP/reference1.07010.573
42DAP/reference1.236720.053
43DAP/reference0.878090.243
47DAP/reference1.420660.008
52DAP/reference1.06041
57DAP/reference0.867640.156

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.591960.027
17DAP/reference0.960580.601
27DAP/reference1.147120.156
39DAP/reference1.208320.146
41DAP/reference1.525650.276
42DAP/reference1.189210.138
43DAP/reference1.25830.042
47DAP/reference1.139010.585
52DAP/reference1.852090.035
57DAP/reference1.437430.017

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.959551
26DAP/20DAP1.462490.103
34DAP/26DAP0.846780.267
51DAP/34DAP1.012410.962
52DAP/51DAP0.928011
53DAP/52DAP1.10010.768
55DAP/53DAP0.888350.303
57DAP/55DAP1.195690.643
62DAP/57DAP0.872970.681
68DAP/62DAP1.276920.646
68DAP/14DAP1.189070.958

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.138690.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.995340.805
Mature Green Tomato/Ripe Tomato1.232930.299
Immature Eggplant/Mature Eggplant0.657230.064
Ripe Pepper/Ripe Tomato0.716580.224
Mature Eggplant/Ripe Tomato0.840640.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.703730.605
1-1-2/M821.071521
12-2/M820.996811
12-4/M820.879681
1-3/M821.579171
2-1-1/M820.843180.683
2-1/M820.912860.74
2-6/M820.740890.501
3-2/M820.746331
4-1-1/M820.841761
4-1/M820.56385N/A
4-3-2/M820.95909N/A
4-3/M821.094721
5-3/M821.120320.427
6-2/M820.661110.481
6-3/M821.16796N/A
7-1/M821.13673N/A
7-2/M820.867040.796
9-3-2/M820.775190.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.933771
IL2-6/WTpooled1.102510.584
IL7-5/WTpooled1.185950.792
IL7-3/WTpooled0.894521
IL12-4/WTpooled1.075490.695
IL1-4/WTpooled1.355641
WT/WTpooled0.999321

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.00381

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.006561
DC3000/delta hrp 6h0.931470.95
DC3000/delta hrp 12h1.011391
DC3000/delta hrp 24h0.894350.225

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.84310.436
DC3000 delta B/DC3000 delta AB1.011060.703

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.397321
Exp 36h0.990591
Exp 60h1.250690.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row10.86727N/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.903110.309
transgenic ySAMdc/azygous control (breaker)1.15990.248
transgenic ySAMdc/azygous control (red)0.958041

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.566680.04

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.666720.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.77050.172
Manapal/WT (break)0.753430.299
Manapal/WT (red)0.900530.36