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Expression of 1-1-2.1.10.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.03870.812
27DAP/17DAP1.140370.833
39DAP/27DAP0.846980.462
41DAP/39DAP1.012910.964
42DAP/41DAP1.01871
43DAP/42DAP0.950230.827
47DAP/43DAP1.27510.384
52DAP/47DAP0.84850.595
57DAP/52DAP1.066950.946

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.015940.846
17DAP/reference0.975250.503
27DAP/reference0.989720.711
39DAP/reference1.022780.603
41DAP/reference1.075020.133
42DAP/reference1.005860.963
43DAP/reference0.939270.247
47DAP/reference1.017090.817
52DAP/reference0.968340.475
57DAP/reference0.967010.235

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.962090.595
27DAP/17DAP0.994390.969
39DAP/27DAP0.956420.628
41DAP/39DAP1.049550.641
42DAP/41DAP1.004531
43DAP/42DAP1.026110.446
47DAP/43DAP1.101330.674
52DAP/47DAP0.989310.93
57DAP/52DAP0.950660.519
57DAP/7DAP0.985641

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.115120.311
17DAP/reference1.063530.525
27DAP/reference1.031980.974
39DAP/reference1.361960.027
41DAP/reference1.256660.117
42DAP/reference1.192680.059
43DAP/reference1.108990.024
47DAP/reference0.955480.504
52DAP/reference1.072490.491
57DAP/reference0.989420.569

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.033940.43
17DAP/reference1.048170.176
27DAP/reference1.056950.359
39DAP/reference0.867810.168
41DAP/reference0.98710.531
42DAP/reference1.030620.519
43DAP/reference0.911540.414
47DAP/reference1.064660.069
52DAP/reference1.004621
57DAP/reference0.893020.194

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.067350.644
17DAP/reference1.086150.298
27DAP/reference0.950220.397
39DAP/reference1.013220.885
41DAP/reference1.030560.818
42DAP/reference1.02580.848
43DAP/reference1.119380.219
47DAP/reference0.976670.434
52DAP/reference1.021271
57DAP/reference0.976730.31

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.980891
26DAP/20DAP0.982031
34DAP/26DAP1.046290.819
51DAP/34DAP1.022590.869
52DAP/51DAP1.011730.836
53DAP/52DAP1.026580.83
55DAP/53DAP0.976950.746
57DAP/55DAP0.807940.548
62DAP/57DAP0.944280.28
68DAP/62DAP1.060660.912
68DAP/14DAP0.959061

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.967590.378

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.344880.417
Mature Green Tomato/Ripe Tomato0.78220.086
Immature Eggplant/Mature Eggplant1.099770.259
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato2.182330.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.941410.944
1-1-2/M820.92886N/A
12-2/M820.936490.955
12-4/M820.959911
1-3/M820.996691
2-1-1/M821.072460.764
2-1/M821.125550.345
2-6/M820.94491
3-2/M821.013421
4-1-1/M820.987171
4-1/M821.157840.853
4-3-2/M821.191350.508
4-3/M820.964281
5-3/M820.988251
6-2/M821.005921
6-3/M821.039311
7-1/M820.856230.803
7-2/M820.940310.881
9-3-2/M821.192811

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.81250.243
IL2-6/WTpooled0.704030.473
IL7-5/WTpooled1.088151
IL7-3/WTpooled1.036971
IL12-4/WTpooled0.78720.71
IL1-4/WTpooled0.912210.699
WT/WTpooled1.036891

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.998441

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.967461
DC3000/delta hrp 6h1.273221
DC3000/delta hrp 12h1.029581
DC3000/delta hrp 24h1.083250.582

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.109060.476
DC3000 delta B/DC3000 delta AB0.899640.23

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.07131
Exp 36h0.814090.623
Exp 60h0.727320.522

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.031361
Var 0h0.85170.216
Var 12h I row2-row11.038130.654
Var 12h NI row2-row10.913050.546
Var 36h I row2-row10.937010.805
Var 36h NI row2-row11.135790.482
Var 60h I row2-row11.194661
Var 60h NI row2-row11.120140.691
Time course 0hI-0hNI1.007381
Time course 12hI-12hNI0.962670.618
Time course 36hI-36hNI0.857590.062
Time course 60hI-60hNI0.82360.081

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.760440.324
transgenic ySAMdc/azygous control (breaker)1.693070.248
transgenic ySAMdc/azygous control (red)1.328670.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.009420.766

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.81630.284

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.220241
Manapal/WT (break)0.746081
Manapal/WT (red)0.884560.607